Locus 10818

Sequence ID dm3.chr3R
Location 16,703,583 – 16,703,702
Length 119
Max. P 0.534411
window14863

overview

Window 3

Location 16,703,583 – 16,703,702
Length 119
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 90.48
Shannon entropy 0.15316
G+C content 0.50630
Mean single sequence MFE -39.50
Consensus MFE -33.49
Energy contribution -34.17
Covariance contribution 0.69
Combinations/Pair 1.13
Mean z-score -1.46
Structure conservation index 0.85
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.08
SVM RNA-class probability 0.534411
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 16703583 119 - 27905053
AAGCAAUAUCCACCUGGGUGUUGGCAUCCGCAGAUUGCUGACUUCGAAUCUGAAGUUGCUGGAGCCGGUUGCGAUCUGCAUCCAGCAUUCUAGCACUUCCGUUUCCUGUGAGACAGAUG
...((((((((....)))))))).((((.(((((((((.(((((((....)))))))((((....)))).))))))))).....((......))......(((((....))))).)))) ( -40.70, z-score =  -1.71, R)
>droYak2.chr3R 5505285 119 - 28832112
AUGCGAUUUUCAGCUGGGUGUUGGCAUCAUUAGAUUGGUGACUUCGACGCUGAAGUUGCUGGAGCCUGUUGAAAUCUGCACCCAGCAUUCUAGCAUUUCCGUUUCCCGUAAGGCAGAAG
(((((.....).(((((((((.((..(((.(((.(..(..((((((....))))))..)..)...))).)))..)).)))))))))......)))).....(((.((....)).))).. ( -39.80, z-score =  -1.74, R)
>droSec1.super_27 768355 119 + 799419
AAGCAAUAUCCACCUGAGUGUUGGCAUCCGUAGACUGCUGACUUCGAAUCUGAAGUUGCUGGAGCCGGUUGCGAUCUGCAUCCAGCAUUCUAGCACUUCCGUUUCCUGUGAGGCAGAAG
...............(((((((((.((..(((((.(((.(((((((....)))))))((((....)))).))).)))))))))))))))).....((((.(((((....))))).)))) ( -35.70, z-score =  -0.41, R)
>droSim1.chr3R 22760102 119 + 27517382
AAGCAAUAUCCACCUGAGUGUUGGCAUCCGCAGAUUGCUGACUUCGAAUCUGAAGUUGCUGGAGCCGGUUGCGAUCUGCAUCCAGCAUUCUAGCACUUCCGUUUCCUGUGAGGCAGAAG
...............(((((((((.((..(((((((((.(((((((....)))))))((((....)))).)))))))))))))))))))).....((((.(((((....))))).)))) ( -41.80, z-score =  -2.00, R)
>consensus
AAGCAAUAUCCACCUGAGUGUUGGCAUCCGCAGAUUGCUGACUUCGAAUCUGAAGUUGCUGGAGCCGGUUGCGAUCUGCAUCCAGCAUUCUAGCACUUCCGUUUCCUGUGAGGCAGAAG
...............(((((((((.....(((((((((.(((((((....)))))))((((....)))).)))))))))..))))))))).....((((.(((((....))))).)))) (-33.49 = -34.17 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:00 2011