| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,699,792 – 16,699,844 |
| Length | 52 |
| Max. P | 0.993320 |
| Location | 16,699,792 – 16,699,844 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 82.12 |
| Shannon entropy | 0.30698 |
| G+C content | 0.47692 |
| Mean single sequence MFE | -16.24 |
| Consensus MFE | -12.70 |
| Energy contribution | -14.50 |
| Covariance contribution | 1.80 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.61 |
| SVM RNA-class probability | 0.993320 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16699792 52 - 27905053 CGUUGACGUUCUUGAUUGGAAUAGGCCGAGCAUAGAGUUCCAAUCAGUAGCA .......(((.(((((((((((..((...)).....))))))))))).))). ( -15.00, z-score = -2.44, R) >droSim1.chr3R 22756363 52 + 27517382 CGUUGACGUUCUUGAUUGGAAUAUGCCGAGCAUAGAGUUCCAAUCAGGAGCA .......(((((((((((((((((((...))))...))))))))))))))). ( -23.50, z-score = -5.61, R) >droSec1.super_27 764611 52 + 799419 CGUUGACGUUCUUGAUUGGAAUAUGCCGAGCAUAGCGUUCCAAUCAGGAGCA .......(((((((((((((((((((...))))...))))))))))))))). ( -23.50, z-score = -5.12, R) >droYak2.chr3R 5501530 52 - 28832112 GCUUGACGUUGUUGGACAGAAUACGCCGAGCACAAAGUAACAAUCAGGAGCA (((((.(((.(((......)))))).))))).....((..(.....)..)). ( -9.10, z-score = 0.09, R) >droEre2.scaffold_4770 12788456 52 + 17746568 GCUAGACGUUCCUGGACAGAAUACGCCGAUCACAAUGUACCAAUCAGGAGCA .......((((((((......((((..........))))....)))))))). ( -10.10, z-score = -0.68, R) >consensus CGUUGACGUUCUUGAUUGGAAUACGCCGAGCAUAGAGUUCCAAUCAGGAGCA .......(((((((((((((((..............))))))))))))))). (-12.70 = -14.50 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:59 2011