| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,694,140 – 16,694,240 |
| Length | 100 |
| Max. P | 0.614492 |
| Location | 16,694,140 – 16,694,240 |
|---|---|
| Length | 100 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 77.72 |
| Shannon entropy | 0.40778 |
| G+C content | 0.48283 |
| Mean single sequence MFE | -27.28 |
| Consensus MFE | -13.97 |
| Energy contribution | -15.23 |
| Covariance contribution | 1.27 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.614492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16694140 100 - 27905053 ----CUAAGAGCCGGCCAUGACAAGCAAGCCUUGUCAGCAUUUCCAUACGCAUUGGGAUAAUAAAACCAG-CCCAAAGGCCAAAUUGAUGGAGGCCAGACGAGCG ----.........((((.(((((((.....))))))).....(((((......(((..........)))(-((....))).......)))))))))......... ( -27.10, z-score = -1.22, R) >droSim1.chr3R 22747345 100 + 27517382 ----CUAAGAGUCGGCCAUGACAAGCAAGCCUUGUCAGCAUUUCCAUACGCAUUGGGAUAAUAAAACCAG-CCCAAAGGCCAAAUUGAUGGAGGCCAGACGAGCG ----......(((((((.(((((((.....))))))).....(((((......(((..........)))(-((....))).......))))))))).)))..... ( -30.20, z-score = -2.36, R) >droSec1.super_27 755658 100 + 799419 ----CUAAGAGUCGGCCAUGACAAGCAAGCCUUGUCAGCAUUUCCAUACGCAUUGGGAUAAUAAAACCAG-CCCAAAGGCCAAAUUGAUGGAGGCCAGACGAGCG ----......(((((((.(((((((.....))))))).....(((((......(((..........)))(-((....))).......))))))))).)))..... ( -30.20, z-score = -2.36, R) >droYak2.chr3R 5490655 100 - 28832112 ----CUUAGAGUCAGCCAUGACAAGCAAGUCUUGUCAGCAUUUCCAUACGCAUUGGGAUAAUAAAACCAG-CCCAAAGGCCAAAUUGAUGGAGGCCAGACGACCA ----......(((.(((.(((((((.....))))))).....(((((......(((..........)))(-((....))).......))))))))..)))..... ( -26.00, z-score = -1.69, R) >droEre2.scaffold_4770 12782866 99 + 17746568 -----CUAAGGUCUGCCAUGACAAGCAGGUCUUGUCAGCAUUUCCAUACGCAUUGGGAUAAUAAAGCCAG-CCCAAAGGCCAAAUUGAUGGAGGCCAGACGACCG -----.....(((((((.(((((((.....))))))).....(((((..((.(((((.............-)))))..)).......))))))).)))))..... ( -28.02, z-score = -1.02, R) >dp4.chr2 18049451 95 + 30794189 CUAUGUAUAUGACAGACAUGACCAACAGACCUUGUCAGCAUC----------UGGGGAUAAUAAAACAAAUCCCAAUGGCAGAGCUGACGAAGGCUAGACAAUUG ...(((.((((.....))))......((.((((((((((.((----------(((((((..........))))).....)))))))))).))))))..))).... ( -25.20, z-score = -2.71, R) >droPer1.super_0 7713136 95 - 11822988 CUGUGUAUAUGACAGGCAUGACCAACAGACCUUGUCAGCAUC----------UGGGGAUAAUAAAACAAACCCCAAUGGCAGAGCUGACGAAGGCUAGACAAUUG ((((...((((.....))))....)))).((((((((((.((----------(((((..............))).....)))))))))).))))........... ( -24.24, z-score = -1.35, R) >consensus ____CUAAGAGUCAGCCAUGACAAGCAAGCCUUGUCAGCAUUUCCAUACGCAUUGGGAUAAUAAAACCAG_CCCAAAGGCCAAAUUGAUGGAGGCCAGACGAGCG .............((((.(((((((.....))))))).((((..........(((((..............)))))..........))))..))))......... (-13.97 = -15.23 + 1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:58 2011