| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,653,193 – 16,653,287 |
| Length | 94 |
| Max. P | 0.686632 |
| Location | 16,653,193 – 16,653,287 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 72.87 |
| Shannon entropy | 0.43080 |
| G+C content | 0.36332 |
| Mean single sequence MFE | -19.43 |
| Consensus MFE | -15.44 |
| Energy contribution | -15.70 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.30 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.686632 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16653193 94 - 27905053 CAAACAUAUGC-AUAUAUGUAGUCCGAUAUAUAGAAAGUCAGAUGU----AGGCAAGGAAUUUCUGGCAGAGAUUUAGUGCAUCAUUGACAUUGGCUUG .........((-.(((((((......)))))))....(((((.((.----..(((..(((((((.....)))))))..)))..)))))))....))... ( -21.80, z-score = -1.07, R) >droSec1.super_27 717247 94 + 799419 CAAACAAAUGC-AUAUAUAUAGUCCGAUAUAUAGAAAGUCAGAUGU----AGGCAAGGAAUUUCUGGCAGAGAUUUAGUGCAUCAUUGACAUUGGCUUG .........((-.(((((((......)))))))....(((((.((.----..(((..(((((((.....)))))))..)))..)))))))....))... ( -21.80, z-score = -1.60, R) >droEre2.scaffold_4770 12743881 89 + 17746568 ------UGUACAAUAUAUACAGUCCGAUAUAUACAAAGCCAGAUGU----AGGCAAGGAAUUUCUGGCACAGAUUUAGUGCAUCAUUGACAUUGGCUUG ------((((...(((((........)))))))))(((((((.(((----..(((..((((((.......))))))..))).......)))))))))). ( -17.30, z-score = -0.09, R) >droVir3.scaffold_13047 7166807 86 + 19223366 -----------CAUAUAUACAA-CUAGUAUGUAUCGUG-CGGAUGUUUACAUAUAAGAAUUUUGUUGGCAAGACUUGAUGCAACAUUGACAUUGGCUUU -----------.((((((((..-...))))))))...(-(.((((((..(((.((((..(((((....)))))))))))).......)))))).))... ( -16.80, z-score = -0.47, R) >consensus ______UAUGC_AUAUAUACAGUCCGAUAUAUAGAAAGUCAGAUGU____AGGCAAGGAAUUUCUGGCAGAGAUUUAGUGCAUCAUUGACAUUGGCUUG .............(((((((......)))))))..((((((.((((......(((..(((((((.....)))))))..))).......)))))))))). (-15.44 = -15.70 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:57 2011