| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,647,796 – 16,647,862 |
| Length | 66 |
| Max. P | 0.909592 |
| Location | 16,647,796 – 16,647,862 |
|---|---|
| Length | 66 |
| Sequences | 5 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 78.35 |
| Shannon entropy | 0.35421 |
| G+C content | 0.42941 |
| Mean single sequence MFE | -19.66 |
| Consensus MFE | -14.08 |
| Energy contribution | -13.64 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.909592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16647796 66 - 27905053 UAAAACACCCUAAUUAUGCCCAACUGCAUUUGGGGUGUUCCUUGA-----------GCU----AAAUAUUAGCGGGGUACU ...((((((((((..((((......))))))))))))))(((...-----------(((----(.....)))).))).... ( -21.40, z-score = -2.42, R) >droEre2.scaffold_4770 12731110 77 + 17746568 CGAAAUACCCUAAUUAUGCCCAACUGCACUUGGGGUGUUCCUUCAGGUGUUCAACUGCU----AAGCAUAAACGGGAUACU .......(((...((((((.((...((((((((((.....)))))))))).....))..----..))))))..)))..... ( -19.90, z-score = -1.22, R) >droYak2.chr3R 5443670 81 - 28832112 CCAAAUACCCUAAUUAUGCCCAACUGCAUUUGCGGUGUUCCCUGAGCUGAUCAACUGCUAACCAAAUAUUAUGGGGAUAUU ..............(((.(((((((((....)))))........(((.........)))............)))).))).. ( -15.90, z-score = -0.48, R) >droSec1.super_27 711342 66 + 799419 GAAAACACCCUAAUUUUGCCCAACUGCAUUUGGGGUGUUCCUUGA-----------GCU----AAAUAUUAGCGGGGUACU ...((((((((((...(((......))).))))))))))(((...-----------(((----(.....)))).))).... ( -21.40, z-score = -2.44, R) >droSim1.chr3R 22704073 66 + 27517382 GAAAACACCCUAAUUUUGCCCAACUGCAUUUGGGGUGUUCCUUGA-----------GCU----AAAUAUUAGUGGGAUACU ....(((((((((...(((......))).)))))))))((((...-----------(((----(.....)))))))).... ( -19.70, z-score = -2.50, R) >consensus CAAAACACCCUAAUUAUGCCCAACUGCAUUUGGGGUGUUCCUUGA___________GCU____AAAUAUUAGCGGGAUACU ....(((((((((...(((......))).)))))))))((((...............................)))).... (-14.08 = -13.64 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:55 2011