| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,646,677 – 16,646,818 |
| Length | 141 |
| Max. P | 0.602585 |
| Location | 16,646,677 – 16,646,818 |
|---|---|
| Length | 141 |
| Sequences | 6 |
| Columns | 144 |
| Reading direction | reverse |
| Mean pairwise identity | 68.89 |
| Shannon entropy | 0.60386 |
| G+C content | 0.31930 |
| Mean single sequence MFE | -29.85 |
| Consensus MFE | -11.69 |
| Energy contribution | -14.13 |
| Covariance contribution | 2.45 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602585 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16646677 141 - 27905053 AUGGAGCUUUAGGGUAUACGAGUA--AAAAUGUCAUAAAUAAAUCAUAAAAGUGAAGGGAGGUAUUUUGUUGUACCGCAAACCUAAGGCUU-AAUUAGGAAAAAAGUCUAUAAAUUAAGCAUAGUGACAUUUUCAUACAGCAAA .....(((...(......)..(((--((((((((((.......((((....))))(((..(((((......))))).....)))...((((-((((.(((......)))...))))))))...))))))))))..))))))... ( -29.70, z-score = -2.09, R) >droWil1.scaffold_181108 2490083 123 + 4707319 AACAGGCUUAGUUAUGUA-AAGCAUUGUUAUCUUAUCAACAAGAACUGACAGUCUGCUCACUUA-UUUAUGGCAACA-AUGUCAACAAUAUUUUUUAUUAAUGAA-UUCAUUAAAGAGAUAGUGUAA----------------- ..(((((((((((.((..-...))(((((........))))).)))))..))))))........-....(((((...-.)))))(((.((((((((..(((((..-..))))))))))))).)))..----------------- ( -21.90, z-score = -0.39, R) >droSim1.chr3R 22702957 141 + 27517382 AUGGAGCUUUGGGGUAUAUGAGUU--AAAAUGUCAUAAAUAAAUCAUAAAAGUGAAGGGAGGUA-AUUGUUGUACCUCAAACCUAAGGCUUGAAUUAGUAAAGAAGUCUAUAAAUUAGGCAUAGUGACAUUUUCAUACAGGCAA .(.((((((((((...(((((...--......)))))......((((....))))...((((((-.......))))))...)))))))))).)....((......(((((.....)))))...((((.....))))....)).. ( -30.90, z-score = -1.55, R) >droSec1.super_27 710216 142 + 799419 AUGGAGCUUUGGGGUAUAUGAGUA--AAAAUGUCAUAAAUAAAUCAUAAAAGUGAAGGGAGGUAUUUUGUUGUACCUCAAACCUAAGGCUUGAAUUAGUAAAGAAGUCUAUAAAUUAGGCAUAGUGACAUUUUCAUUCAGCCAA .(((.(((....)))...(((((.--((((((((((.......((((....))))((((((((((......)))))))...)))...((((((.(((....((....)).))).))))))...)))))))))).))))).))). ( -35.50, z-score = -2.68, R) >droYak2.chr3R 5442546 142 - 28832112 GUGGAGCUUCGGGGUAUAUAAGUA--GAAGUGUCAUAAAUAAAUCAUUAAUGUGAUGGGAGGUAUUUUGUUGUACCUCGAAUCUAAAGCUUGAAUAAGGGAAGAAGUAUAUAAAUUAACAAUGGUAACAUUUUCAUACAGCCAA .(((.(((((....(((.(((((.--..((..((........(((((....)))))..(((((((......)))))))))..))...))))).)))......)))))............((((....)))).........))). ( -26.30, z-score = -0.13, R) >droEre2.scaffold_4770 12730007 142 + 17746568 -UUGAGCUUUGGCGGUUAUGGGUGUCUUGGUGUCUUAAAUAAAUCUCUAAAGUUAU-UUAGGUAUGUUGUUGUACCUCAAAUAAAAAGCUUGAAUUAGGGAAGAAGUUUAUAAAUUAACCAUGGUGACAUUUCCAUACAGCCAA -.......(((((...((((((((((.((((.(..(((((...(((((((((((((-((((((((......)))))).)))))....)))....)))))))....)))))..)....))))....)))))..)))))..))))) ( -34.80, z-score = -1.66, R) >consensus AUGGAGCUUUGGGGUAUAUGAGUA__AAAAUGUCAUAAAUAAAUCAUAAAAGUGAAGGGAGGUAUUUUGUUGUACCUCAAACCUAAAGCUUGAAUUAGGAAAGAAGUCUAUAAAUUAAGCAUAGUGACAUUUUCAUACAGCCAA ...((((((((((..............................((((....))))...(((((((......)))))))...))))))))))..................................................... (-11.69 = -14.13 + 2.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:54 2011