| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,629,288 – 16,629,398 |
| Length | 110 |
| Max. P | 0.787070 |
| Location | 16,629,288 – 16,629,398 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 68.71 |
| Shannon entropy | 0.55594 |
| G+C content | 0.49033 |
| Mean single sequence MFE | -27.21 |
| Consensus MFE | -11.92 |
| Energy contribution | -11.36 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.787070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16629288 110 + 27905053 -AGGAAUCGAG--UGGGCG-AGCUGAUUAAUCAUGAUUAGCACACGUCUCCGUUGCGUUUACUUCCACUGUU-UGUCCCUAACCCAUCCAACC--GCCUAUCGAAAAACUCCAUCCC -.(((.((((.--((((((-.((((((((....))))))))..((((.......))))..............-...................)--))))))))).....)))..... ( -24.60, z-score = -1.34, R) >droSim1.chr3R 22685485 112 - 27517382 -AGGAGUCGAG--UGGGCGGAGCUGAUUAAUCAUGAUUAGCACACGUCUCCGUUGCGAUUACUUCCACUGUUCUGUCCCUAACACAUCCAACC--GCCUAUCGAAAGACUCCAUCCC -.((((((..(--(((((((.((((((((....))))))))..........((((.(((.((.......))...))).).)))........))--)))))).....))))))..... ( -35.00, z-score = -2.91, R) >droSec1.super_27 692700 114 - 799419 -AGGAGUCGAG--UGGGCGGAGCUGAUUAAUCAUGAUUAGCACACGUCUCCGUUGCGAUUACUUCCACUGUUCUGUCCCUAACACAUCCAACCCCGCCUAUCGAAAGACUCCAUCCC -.((((((..(--(((((((.((((((((....))))))))..........((((.(((.......((......)).........))))))).)))))))).....))))))..... ( -35.19, z-score = -3.03, R) >droEre2.scaffold_4770 12711711 110 - 17746568 -AGGAGUCGAG--UGGGAG-AGCUGAUUAAUCAUGAUUAGCACACUUCUCCGUUGCGAUUACUUUCAAUGUU-UGUCCCUAACCCAUCCAACA--GCCCAUCGAAAGAGUCCAUCCC -.((((..(((--((....-.((((((((....)))))))).)))))))))..((.((((.(((((.(((.(-(((..............)))--)..))).))))))))))).... ( -25.64, z-score = -1.02, R) >droWil1.scaffold_181108 2472131 117 - 4707319 AGAGAUUCAAAGAUGAAGGCGGCGAUUCGUUUGUAACCUUUUAUUUUCCUUACCCUUUUCGCUCUCUCUCUCUCCUAUCUCUCUCUCUGCCUCAUGUCACCCGCACAAUGCCCUCUU ((((((....(((.(((((.(((((.......((((.............)))).....))))).))).)))))...))))))....................((.....))...... ( -15.62, z-score = 0.31, R) >consensus _AGGAGUCGAG__UGGGCG_AGCUGAUUAAUCAUGAUUAGCACACGUCUCCGUUGCGAUUACUUCCACUGUU_UGUCCCUAACACAUCCAACC__GCCUAUCGAAAGACUCCAUCCC .((((((((.....(((((..((((((((....))))))))...)))))......))))).)))..................................................... (-11.92 = -11.36 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:52 2011