| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,127,864 – 8,127,914 |
| Length | 50 |
| Max. P | 0.963650 |
| Location | 8,127,864 – 8,127,914 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 92.80 |
| Shannon entropy | 0.12547 |
| G+C content | 0.54000 |
| Mean single sequence MFE | -14.65 |
| Consensus MFE | -12.88 |
| Energy contribution | -13.08 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.963650 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8127864 50 + 23011544 AGCCCAAGUCAAGUGGAGGUUUCAUUAACGCCACCUAACCUCCACGUCGA ............(((((((((...............)))))))))..... ( -14.26, z-score = -2.94, R) >droSim1.chr2L 7907412 50 + 22036055 AGCCCAAGUCAAGUGGAGGUUUCAUUAACGCCACCUAACCUCCACGUCGA ............(((((((((...............)))))))))..... ( -14.26, z-score = -2.94, R) >droSec1.super_3 3624274 50 + 7220098 AGCCCAAGUCAAGUGGAGGUUUCAUUAACGCCACCUAACCUCCACGUCGA ............(((((((((...............)))))))))..... ( -14.26, z-score = -2.94, R) >droYak2.chr2L 10758843 50 + 22324452 GGCCCAAGUCAAGUGGUGGUUUCAUUAACGCCACCCAACCUCCACGGCGC .(((..........((((((.........))))))..........))).. ( -12.25, z-score = -0.15, R) >droEre2.scaffold_4929 17033650 50 + 26641161 GGCCCAAGUCAAGUGGAGGUUUCAUGAACGCCAUCCAACCUCCACGUUGA ........(((((((((((((..(((.....)))..))))))))).)))) ( -18.20, z-score = -2.99, R) >consensus AGCCCAAGUCAAGUGGAGGUUUCAUUAACGCCACCUAACCUCCACGUCGA ............(((((((((...............)))))))))..... (-12.88 = -13.08 + 0.20)
| Location | 8,127,864 – 8,127,914 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 92.80 |
| Shannon entropy | 0.12547 |
| G+C content | 0.54000 |
| Mean single sequence MFE | -17.42 |
| Consensus MFE | -14.62 |
| Energy contribution | -14.90 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8127864 50 - 23011544 UCGACGUGGAGGUUAGGUGGCGUUAAUGAAACCUCCACUUGACUUGGGCU ((((.(((((((((..((.......))..)))))))))))))........ ( -16.70, z-score = -1.85, R) >droSim1.chr2L 7907412 50 - 22036055 UCGACGUGGAGGUUAGGUGGCGUUAAUGAAACCUCCACUUGACUUGGGCU ((((.(((((((((..((.......))..)))))))))))))........ ( -16.70, z-score = -1.85, R) >droSec1.super_3 3624274 50 - 7220098 UCGACGUGGAGGUUAGGUGGCGUUAAUGAAACCUCCACUUGACUUGGGCU ((((.(((((((((..((.......))..)))))))))))))........ ( -16.70, z-score = -1.85, R) >droYak2.chr2L 10758843 50 - 22324452 GCGCCGUGGAGGUUGGGUGGCGUUAAUGAAACCACCACUUGACUUGGGCC ..(((....((((..(((((.(((.....)))..)))))..)))).))). ( -17.10, z-score = -0.85, R) >droEre2.scaffold_4929 17033650 50 - 26641161 UCAACGUGGAGGUUGGAUGGCGUUCAUGAAACCUCCACUUGACUUGGGCC ((((.(((((((((..(((.....)))..)))))))))))))........ ( -19.90, z-score = -2.78, R) >consensus UCGACGUGGAGGUUAGGUGGCGUUAAUGAAACCUCCACUUGACUUGGGCU ((((.(((((((((..((.......))..)))))))))))))........ (-14.62 = -14.90 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:14 2011