| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,619,662 – 16,619,765 |
| Length | 103 |
| Max. P | 0.741993 |
| Location | 16,619,662 – 16,619,765 |
|---|---|
| Length | 103 |
| Sequences | 9 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 67.59 |
| Shannon entropy | 0.59179 |
| G+C content | 0.36131 |
| Mean single sequence MFE | -15.77 |
| Consensus MFE | -8.60 |
| Energy contribution | -8.82 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.741993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16619662 103 + 27905053 -UUGUAAACAAAAAUCCAAUUGGCUAUA-----CCAACAAACAACAUUGGCUAAUUGCAGGGAAAAAUACUACAAUAGUUUGUUUACUAGGCUAGGUUAGGUAGAAAGG -..(((((((((....((((((((((..-----..............))))))))))..((........)).......)))))))))...(((......)))....... ( -17.59, z-score = -0.02, R) >droSim1.chr3R 22674746 89 - 27517382 -UUGUAAACAAAAAUCCAAUUGGCUAAA-----CCAACAAAGAACAUUGGCUAAUUGCAGGGACCAAGAUUA---------GUUUACUAGGCUAGGU-----AGAAAGG -...............(((((((((((.-----.............))))))))))).....(((.((.(((---------(....)))).)).)))-----....... ( -15.94, z-score = -0.29, R) >droSec1.super_27 683070 89 - 799419 -UUGUAAACAAAAAUCCAAUUGGCUAAA-----CCAACAAAAAACAUUGGCUAAUUGCAGGGAACAAGAUUA---------GUUUACUAGGCUAGGU-----AGAAAGG -..((((((...(((((((((((((((.-----.............)))))))))))..(....)..)))).---------))))))..........-----....... ( -15.94, z-score = -0.87, R) >droYak2.chr3R 5414043 81 + 28832112 -UUGUAAACAAAAAUCCAAUUGGCUAAA-----CCAAAAA----CAUUGGCUAAUUGCAGGGAACAAGACUA---------AUUGAUCAGACUAG---------AAAGG -...............(((((((((((.-----.......----..))))))))))).((.((.(((.....---------.))).))...))..---------..... ( -12.10, z-score = -0.82, R) >droEre2.scaffold_4770 12702350 81 - 17746568 -UUGUAAACAAAAAUCCAAUUGGCUAAA-----CCAACAA----CAUUGGCUAAUUGCAGGGAACAAGUCUA---------CUUGAUCAGGCUAG---------AAAGG -..............((((((((((((.-----.......----..))))))))))((...((.((((....---------)))).))..))...---------...)) ( -15.60, z-score = -1.00, R) >droAna3.scaffold_13340 10734178 79 - 23697760 --UUUAAACAAAAAUCCAAUUGGCGAAU-----ACAAUAA------UUGGCUAAUUGCAAGGACUAAGCUUA--------GAAAGGUUAGCUUAG---------AAAGG --..............((((((((.(((-----......)------)).))))))))......(((((((..--------........)))))))---------..... ( -18.10, z-score = -2.81, R) >dp4.chr2 5958114 85 + 30794189 -UCGAAAACAAAAAUCCAAUUGGCUAAA-----AUGGGAAA----AUUGGCUAAUUGCGGGAGGACUUACCG------UUAGGACUUUAGGCUAGG--------AAAGG -.............(((((((((((((.-----........----.))))))))))((.((((..((.....------..))..))))..))..))--------).... ( -17.80, z-score = -0.90, R) >droPer1.super_19 1695148 85 + 1869541 -UCGAAAACAAAAAUCCAAUUGGCUAAA-----AUGGGAAA----AUUGGCUAAUUGCGGGAGGACUUACCG------UUAGGACUUUAGGCUAGG--------AAAGG -.............(((((((((((((.-----........----.))))))))))((.((((..((.....------..))..))))..))..))--------).... ( -17.80, z-score = -0.90, R) >droWil1.scaffold_181108 2461313 93 - 4707319 UUGAAAAACAAGAAUCCAAUUGGCUAAAUACACACAACAAAUG-AAUUGGCUAAUUGUGGGGAGGUAAUUAACUAG----GAAAAGUAAGAAUAGAAA----------- ..............(((((((((((((................-..)))))))))).(((..((....))..))))----))................----------- ( -11.07, z-score = -0.20, R) >consensus _UUGUAAACAAAAAUCCAAUUGGCUAAA_____CCAACAAA___CAUUGGCUAAUUGCAGGGAACAAGACUA_________GUUGAUUAGGCUAGG________AAAGG ................(((((((((((...................))))))))))).................................................... ( -8.60 = -8.82 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:50 2011