| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,617,611 – 16,617,706 |
| Length | 95 |
| Max. P | 0.949842 |
| Location | 16,617,611 – 16,617,706 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 59.30 |
| Shannon entropy | 0.85790 |
| G+C content | 0.45536 |
| Mean single sequence MFE | -20.13 |
| Consensus MFE | -9.58 |
| Energy contribution | -9.23 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.74 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.949842 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16617611 95 + 27905053 ---------CAUGCCAACUAUUACCAAC-AUUUGCCACAUGCAACAUA-UGCUCCUAGGUCGCCGGCAAACUGGAUGAGAUCUACAAAACCGGCAAGUUGGCUCAC ---------...(((((((.........-...((((....(((.....-)))...((((((.((((....))))....)))))).......))))))))))).... ( -26.70, z-score = -2.42, R) >anoGam1.chr2R 4707372 103 + 62725911 UUGUUCCCCCGGGUUCAAGUCUUCAUUCCAUAUGCUCUUACCUUCAUC---CGUACAGGUUGCCGGCCGGUUGGACGACAUCUACAAAACGGGCAAGCUGGCCCAC ((((((..((((....(((....(((.....)))..))).((..((.(---(.....)).))..))))))..))))))............((((......)))).. ( -23.50, z-score = 1.25, R) >droGri2.scaffold_14830 1116967 86 + 6267026 --------------------GUAUGUGCUUAUUCUUAAUUGUAUUUUCAAUUUUGAAGGUCGCCGGCAAACUGGAUGAAAUCUACAAAACCGGUAAACUGGCUCAC --------------------...((.(((..(((..(((((......)))))..)))(((.(((((.....(((((...))))).....)))))..)))))).)). ( -17.80, z-score = -1.23, R) >droMoj3.scaffold_6540 29689095 93 + 34148556 -----------GAGGUAUUUUUGUUUCAAAUACAAUUUGUCUGUCUUU--UCAAUUAGGUCGCUGGCAAAUUGGAUGAAAUCUACAAAACUGGCAAACUUGCCCAC -----------(.((((..(((((((((....(((((((((((.(((.--......))).))..)))))))))..)))).....((....)))))))..))))).. ( -18.90, z-score = -0.91, R) >droVir3.scaffold_13047 7131456 90 - 19223366 ------------AGCUGCUUUCGUUUGUAAUA-AUGCUGCAUAU-UUG--UUGUUCAGGUCGCCGGCAAACUGGAUGAAAUCUACAAAACUGGCAAACUUGCCCAC ------------.((.((..............-..)).))...(-(((--(..((((.....((((....)))).))))....)))))...((((....))))... ( -16.89, z-score = 1.00, R) >droWil1.scaffold_181108 2458880 84 - 4707319 -------------------UGGCUUAUCAAAUUGCAUUGAUUUACAUA---CGAAAAGGUCGCUGGAAAACUGGAUGAAAUCUACAAAACCGGCAAACUUGCUCAU -------------------((....(((((......)))))...))..---.((..((((.(((((.....(((((...))))).....)))))..))))..)).. ( -14.00, z-score = -0.68, R) >dp4.chr2 5955941 73 + 30794189 ------------------------------UA-AUUUGAUGACUUGCG--UCACGUAGGUCGCUGGCAAAUUGGAUGAAAUUUACAAAACCGGCAAACUCGCUCAC ------------------------------..-...(((.((((((((--...))))))))(((((....(((...........)))..)))))........))). ( -16.80, z-score = -1.23, R) >droAna3.scaffold_13340 10732062 83 - 23697760 -----------------------UAAACAAUAAGCGUAAUGUUGGAUCCUUCCCCUAGGUCGCCGGAAAACUGGAUGAAAUCUACAAAACCGGCAAGCUGGCUCAC -----------------------.........(((.........((.(((......)))))(((((.....(((((...))))).....)))))..)))....... ( -18.20, z-score = -0.48, R) >droEre2.scaffold_4770 12700318 96 - 17746568 -----CAACCGCGACCACAACGACAAACCAUGUACCAUGUG----AAA-UGCUCCUAGGUCGCCGGCAAACUGGAUGAGAUCUACAAAACCGGCAAGCUGGCUCAC -----...((((((((......(((.....)))..(((...----..)-))......))))(((((.....(((((...))))).....)))))..)).))..... ( -21.60, z-score = -0.24, R) >droYak2.chr3R 5412050 88 + 28832112 ------------GAGGACAAAGACAAGC-AUAUACUAUGGG----ACA-UGCUCUUAGGUCGCCGGCAAACUGGAUGAGAUCUACAAAACCGGCAAGUUGGCUCAC ------------(((..(((.(((.(((-((...(....).----..)-)))).....)))(((((.....(((((...))))).....)))))...))).))).. ( -22.10, z-score = -1.32, R) >droSec1.super_27 681023 94 - 799419 ---------CAUGACA-CGAACACCAAC-AUUUGCCACAUGCAACAUA-UGCUCCUAGGUCGCCGGCAAACUGGAUGAGAUCUACAAAACUGGCAAGUUGGCUCAC ---------.......-.((...(((((-..((((((...(((.....-)))...((((((.((((....))))....))))))......))))))))))).)).. ( -24.90, z-score = -1.91, R) >consensus ____________G____C_AUUACAAAC_AUAUACUAUGUGUAUCAUA__UCUCCUAGGUCGCCGGCAAACUGGAUGAAAUCUACAAAACCGGCAAGCUGGCUCAC .............................................................(((((.....(((((...))))).....)))))............ ( -9.58 = -9.23 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:49 2011