| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,601,670 – 16,601,765 |
| Length | 95 |
| Max. P | 0.665813 |
| Location | 16,601,670 – 16,601,765 |
|---|---|
| Length | 95 |
| Sequences | 10 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 80.82 |
| Shannon entropy | 0.40928 |
| G+C content | 0.30572 |
| Mean single sequence MFE | -17.23 |
| Consensus MFE | -9.73 |
| Energy contribution | -10.60 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.665813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16601670 95 - 27905053 GGAAACUCAAUGCGACAUUUGCAUUUUUAAUGCAGACCCACA------UAUAAAACUACGUUUUUUAUGAGUUGAUUUUGAUUUCCGUA-----CUUCUUUUUAUA-- (((((.((((..((((.(((((((.....)))))))....((------((.(((((...))))).)))).))))...)))))))))...-----............-- ( -22.30, z-score = -4.60, R) >droSim1.chr3R 22656150 95 + 27517382 GGAAACUCAAUGCGACAUUUGCAUUUUUAAUGCAGACCCACA------UAUAAAACUACGUUUUUUAUGAGUUGAUUUUGAUUUGCGUA-----CUUCUUUUUAUA-- (.(((.((((..((((.(((((((.....)))))))....((------((.(((((...))))).)))).))))...))))))).)...-----............-- ( -17.60, z-score = -2.26, R) >droSec1.super_27 665107 95 + 799419 GGAAACUCAAUGCGACAUUUGCAUUUUUAAUGCAGACCCACA------UAUAAAACUACGUUUUUUAUGAGUUGAUUUUGAUUUGCGUA-----CUUCUUUUUAUA-- (.(((.((((..((((.(((((((.....)))))))....((------((.(((((...))))).)))).))))...))))))).)...-----............-- ( -17.60, z-score = -2.26, R) >droYak2.chr3R 5394093 95 - 28832112 GGAAACUCAAUGCGACAUUUGCAUUUUUAAUGCAGACCCACA------UAUAAAACGACGUUUUUUAUAAGAUGAUUUUGAUUUGCGUA-----CUUCUUUUUAUA-- (....)...((((((..(((((((.....)))))))......------..........((((((....))))))........)))))).-----............-- ( -14.00, z-score = -1.00, R) >droEre2.scaffold_4770 12684533 95 + 17746568 GGAAACUCAAUGCGACAUUUGCAUUUUUAAUGCAGACCCACA------UAUAAAACUACGUUUUUUAUGAGCUGAUUUUGAUUUGCGUA-----CUUCUUUUUAUA-- (....)...((((((..(((((((.....)))))))....((------((.(((((...))))).)))).............)))))).-----............-- ( -15.40, z-score = -1.50, R) >droAna3.scaffold_13340 10716488 95 + 23697760 GGAAACUCAAUGCGACAUUUGCAUUUUUAAUGCAGACC------CACAUAUAAAACUUUAUUUUUUAUGAGUUGAUUUUGAUUUGC----UUGCCUCUUUUUAUU--- (.(((.((((..((((.(((((((.....)))))))..------..((((.((((.....)))).)))).))))...))))))).)----...............--- ( -15.10, z-score = -1.46, R) >dp4.chr2 5939980 104 - 30794189 GGAAACUCAAUGCGACAUUUGCAUUUUUAAUGCAUACCCACAUGCGAGUAUAAAACGUUGUUUUUUAUGAGUUGAUUUUGAUUUGCGUA--AUUCUUCUUUAUUUA-- (((((((((((((((...)))))))......((((......)))))))).....((((.(((..(((.....)))....)))..)))).--.))))..........-- ( -15.10, z-score = 0.47, R) >droPer1.super_19 1676215 101 - 1869541 CGAAACUCAAUGCGACAUUUGCAUUUUUAAUGCAUACCCACAUGCGAGUAUAAAACGUUGUUUUUUAUGAGUUGAUUUUGAUUUGCGUA-----CUUCUUUAUUUA-- .((((((((((((((...)))))))......((((......)))))))).....((((.(((..(((.....)))....)))..)))).-----.)))........-- ( -14.70, z-score = 0.27, R) >droWil1.scaffold_181108 2442730 107 + 4707319 GGAAACCCAAUGCGACAUUUGCAUUUUUAAUGCAAGCCAACA-ACAUAUAUAAAAACUUCUUUUUUAUGAGUUGAUUUUGAUUUGCGGGGUAAGUUCCUUUUUUUAUA (((((((((((((((...))))))).....(((((..(((((-((.((((.((((.....)))).)))).))))...)))..)))))))))...)))).......... ( -24.30, z-score = -2.47, R) >droMoj3.scaffold_6540 29673178 82 - 34148556 AGAAACUCAAUGCGACAUUUGCAUUUUUAAUGCAGACCAACA--AAUAAAUCUGCGUUUUUUUUUUUAGAGUUGAUUUCGAUUU------------------------ ...((((((((((((...)))))))...((((((((......--......))))))))..........)))))...........------------------------ ( -16.20, z-score = -1.80, R) >consensus GGAAACUCAAUGCGACAUUUGCAUUUUUAAUGCAGACCCACA______UAUAAAACUACGUUUUUUAUGAGUUGAUUUUGAUUUGCGUA_____CUUCUUUUUAUA__ ......((((..((((.(((((((.....)))))))............(((((((.......))))))).))))...))))........................... ( -9.73 = -10.60 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:47 2011