| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,594,329 – 16,594,389 |
| Length | 60 |
| Max. P | 0.751587 |
| Location | 16,594,329 – 16,594,389 |
|---|---|
| Length | 60 |
| Sequences | 4 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 83.56 |
| Shannon entropy | 0.26816 |
| G+C content | 0.44152 |
| Mean single sequence MFE | -12.67 |
| Consensus MFE | -10.21 |
| Energy contribution | -10.53 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751587 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16594329 60 + 27905053 CAAGGAGAAAAA-AAUACAGUCGACUAAAGGUGUAGUUCACCAGAAGGUGGUCGGCAUCCU ..((((......-......((((((((..((((.....))))......)))))))).)))) ( -15.92, z-score = -2.67, R) >droYak2.chr3R 5386279 59 + 28832112 CAAGGAGAACAAAU-UACAGUCGACCUAAGGUGCAAUUUA-UAGAAGGUGGUCGGAAACAA ..............-....(.(.((((...(((.....))-)...)))).).)(....).. ( -7.70, z-score = -0.08, R) >droSec1.super_27 657645 61 - 799419 CAAGGAGAAAAAAUAAACAGUCGACUAAAGGUGUAGUUCAGCGGAAAGUGGUCGGCAUCCU ..((((.............((((((((..(.((.....)).)......)))))))).)))) ( -12.44, z-score = -1.66, R) >droSim1.chr3R 22648744 60 - 27517382 CAAGGAGAAAAA-UAAACAGUCGACUGAAGGUGUAGUUCACCAGAAGGUGGUCGGCAUCCU ..((((......-......((((((((..((((.....))))......)))))))).)))) ( -14.62, z-score = -1.62, R) >consensus CAAGGAGAAAAA_UAAACAGUCGACUAAAGGUGUAGUUCACCAGAAGGUGGUCGGCAUCCU ...................((((((((..((((.....))))......))))))))..... (-10.21 = -10.53 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:45 2011