| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,564,639 – 16,564,744 |
| Length | 105 |
| Max. P | 0.654773 |
| Location | 16,564,639 – 16,564,744 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 83.32 |
| Shannon entropy | 0.31722 |
| G+C content | 0.45399 |
| Mean single sequence MFE | -32.45 |
| Consensus MFE | -22.77 |
| Energy contribution | -24.23 |
| Covariance contribution | 1.46 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654773 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16564639 105 - 27905053 ----GGUUAGUUGGCUUAGUGUCGGCAUGAGUUAGGGCCACCAACAUGGCCAUAGCUUUGGAAAUGAUCUGGGGCUCGGGACAAUGCCAUUACAAAUCAAUUUGGCUAA ----(((((((((..((.(((..(((((..(((.(((((.(((.(((..(((......)))..)))...))))))))..))).)))))..)))))..))).)))))).. ( -36.20, z-score = -2.09, R) >droSim1.chr3R 22618519 105 + 27517382 ----GGUUAGUUGGUUUAGUGUCGGCAUGAGUUAGUGCCACCAACAUGGCCAUAGCUUUGGAAAUGAUCUGGGGCUUGGGACAAUGCCAUUACAAAUCAAUUUGGCUAA ----(((((((((((((.(((..(((((..(((...(((.(((.(((..(((......)))..)))...))))))....))).)))))..)))))))))).)))))).. ( -35.20, z-score = -2.01, R) >droSec1.super_27 628014 105 + 799419 ----GGUUAGUUGGUUUAGUGUCGGCAUGAGUUAGUGCCACCAACAUGGCCAUAGCUUUGGAAAUGAUCUGGGGCUUGGGACAAUGCCAUUACAAAUCAAUUUGGCUAA ----(((((((((((((.(((..(((((..(((...(((.(((.(((..(((......)))..)))...))))))....))).)))))..)))))))))).)))))).. ( -35.20, z-score = -2.01, R) >droYak2.chr3R 5353944 100 - 28832112 ----GGUUAGUUGGUUUAGUGUCGGCAUGAGUUAG---UAUCAACAUAGCCAC--CUUUGGAAGUGAUCUGGGGCUUGGGACAAUGCCAUUACAAAUCAAUUUGGCUUA ----(((((((((((((.(((..(((((..(((..---......((.((((.(--(...(((.....))))))))))).))).)))))..)))))))))).)))))).. ( -25.80, z-score = -0.33, R) >droEre2.scaffold_4770 12647429 103 + 17746568 ----GGUUAGUUGGUUUAGUGUCGGCAUGAGUUAGUGCCACCAACAUAGCAAC--CUUUGGAAAUGGUCAGGGGCUUGGGACAACGACAUGACAAAUCAAUUUGGCCAA ----(((((((((((((.((((((((((......)))))..........((((--((((((......))))))).))).......)))))...))))))).)))))).. ( -32.90, z-score = -1.77, R) >droAna3.scaffold_13340 10678818 92 + 23697760 GGUUAGUUGGUUUGUUUGGUGUCGGUAUAAGUUAGUGCCACCAACA-----------CCGGAG------UGGGCCUGGGAACAAUGCCAUUACAAAUCAAUUUGGCUAA ((((((((((((((((((((((.(((((......)))))....)))-----------))))).------..(((.((....))..)))....)))))))).)))))).. ( -29.40, z-score = -1.37, R) >consensus ____GGUUAGUUGGUUUAGUGUCGGCAUGAGUUAGUGCCACCAACAUGGCCAU__CUUUGGAAAUGAUCUGGGGCUUGGGACAAUGCCAUUACAAAUCAAUUUGGCUAA ....(((((((((((((.(((..(((((..(((...(((.(((.(((..(((......)))..)))...))))))....))).)))))..)))))))))).)))))).. (-22.77 = -24.23 + 1.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:40 2011