| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,116,155 – 8,116,235 |
| Length | 80 |
| Max. P | 0.892060 |
| Location | 8,116,155 – 8,116,235 |
|---|---|
| Length | 80 |
| Sequences | 9 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 75.48 |
| Shannon entropy | 0.48564 |
| G+C content | 0.49148 |
| Mean single sequence MFE | -25.73 |
| Consensus MFE | -9.87 |
| Energy contribution | -10.82 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.892060 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8116155 80 - 23011544 UUUAAUAAACUCAUUUCCGUUCUGGCUAGGCAACUUCAUGUGUGUCCGGUCAG-----------CAGCCGCACACUCC----GUUGCUGUCUCGU .................((....(((..((((((.....(((((..((((...-----------..)))))))))...----))))))))).)). ( -18.80, z-score = -1.12, R) >droGri2.scaffold_15252 13740077 83 - 17193109 -UUAAUAAACUCAUUUCCGUUCUGGCUAAGCAACAUUUU---CAUUUGGAC--------UCUUGUAGCGAGCCAAAUGUUGCUUCUGGUUUUUGU -....................(..(..((((((((((..---....(((.(--------((.......)))))))))))))))))..)....... ( -16.90, z-score = -1.02, R) >droPer1.super_46 109773 95 - 590583 UUUAAUAAACUCAUUUCCGUUCUGGCUAGGCAACGUCCUAGGUGUGUGGUUAAGGGCUCUCCCUUAGCCGCACACUUGGGGGGUUGCUCUCUUGG .....................(..(...((((((.(((((((((((((((((((((....))))))))))))))))))))).))))))...)..) ( -47.20, z-score = -6.72, R) >dp4.chr4_group4 5637882 95 + 6586962 UUUAAUAAACUCAUUUCCGUUCUGGCUAGGCAACGUCCUAGGUGUGUGGUUAAGGGCUCUCCCUUAGCCGCACACUUGGGGGGUUGCUCUCUUGG .....................(..(...((((((.(((((((((((((((((((((....))))))))))))))))))))).))))))...)..) ( -47.20, z-score = -6.72, R) >droAna3.scaffold_12916 11839583 85 + 16180835 UUUAAUAAACUCAUUUCCGUUCUGGCUAGGCAACUCCUUGUGUGUCGGGCU------CCUCACAUGGCCGCACACUCU----GUUGCUCUCUCGU ............................((((((.....(((((.(((.(.------........).))))))))...----))))))....... ( -20.30, z-score = -1.74, R) >droEre2.scaffold_4929 17021874 79 - 26641161 UUUAAUAAACUCAUUUCCGUUCUGGCUAGGCAACUUCUUGUGUGU-CGGGUAG-----------CAGCCGCACACUCC----GUUGCUGUCUCGU .................((....(((..((((((.....(((((.-(((....-----------...))))))))...----))))))))).)). ( -19.60, z-score = -1.04, R) >droYak2.chr2L 10747011 79 - 22324452 UUUAAUAAACUCAUUUCCGUUCUGGCUAGGCAACUUCUUGUGUGU-CGGUCAG-----------CAGCCGCACACUCC----GUUGCUGUCUCGU .................((....(((..((((((.....(((((.-((((...-----------..)))))))))...----))))))))).)). ( -21.20, z-score = -2.14, R) >droSec1.super_3 3612535 80 - 7220098 UUUAAUAAACUCAUUUCCGUUCUGGCUAGGCAACUUCAUGUGUGUCCGGGCAG-----------CAGCCGCACACUCC----GUUGCUGUCUCGU .................((....(((..((((((.....((((((...(((..-----------..)))))))))...----))))))))).)). ( -20.20, z-score = -0.80, R) >droSim1.chr2L 7895665 80 - 22036055 UUUAAUAAACUCAUUUCCGUUCUGGCUAGGCAACUUCAUGUGUGUCCGGGCAG-----------CAGCCGCACACUCC----GUUGCUGUCUCGU .................((....(((..((((((.....((((((...(((..-----------..)))))))))...----))))))))).)). ( -20.20, z-score = -0.80, R) >consensus UUUAAUAAACUCAUUUCCGUUCUGGCUAGGCAACUUCUUGUGUGUCCGGUCAG___________CAGCCGCACACUCC____GUUGCUGUCUCGU ............................((((((.......((((.(((..................))).)))).......))))))....... ( -9.87 = -10.82 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:13 2011