| Sequence ID | dm3.chr2L |
|---|---|
| Location | 774,386 – 774,498 |
| Length | 112 |
| Max. P | 0.825383 |
| Location | 774,386 – 774,498 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 84.05 |
| Shannon entropy | 0.28009 |
| G+C content | 0.61846 |
| Mean single sequence MFE | -45.92 |
| Consensus MFE | -34.22 |
| Energy contribution | -34.54 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.825383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 774386 112 + 23011544 UCCACUCGCUGCU---CAGCGAAGCGGCCACUUUUAGUGCACUGGAGUGUUUGGUCGCAGAG---GGGGUGGCUUUUUAGGGGGCGGAACUGGCUGGGCGGUGGUCGGUGGGUGGAAG (((((((.(((((---(...(((((.(((.(((((.(((.((..((...))..))))).)))---))))).))))).....)))))).(((((((.......)))))))))))))).. ( -47.70, z-score = -2.07, R) >droSim1.chr2L 774825 113 + 22036055 UCCACUCGCUGCU---CAGCGAAGCGGCCACUUUUAGUGCACUGGAGUGUUUGGUCGCAGAGC--GGGGUGGCUUUUUAGGGGGCGGAGCAGGCUGUUCGGUGGUCGGUGGGUGGAAG (((((((((((..---((.((((.(((((..((((((....))))))(((((.(((.((((((--......)))))....).))).)))))))))))))).))..))))))))))).. ( -51.70, z-score = -3.07, R) >droSec1.super_14 744555 113 + 2068291 UCUACUCGCUGCU---CAGCGAAGCGGCCACUUUUAGUGCACUAGAGUGUUUGGUUGCAGAGC--GGGGUGGCUCUUUAGUGGGCGGAGCAGGGUGGGCGGUAGUCGGUGGGUGGGAG ....(((.(..((---((.(((..((.(((((((..((.((((((((.(((...((((...))--))...))).)))))))).)).....))))))).))....))).))))..)))) ( -45.20, z-score = -1.58, R) >droYak2.chr2L 756858 105 + 22324452 UUCACUCGCUGCUGCUCAGCGAAGCGGCCACUUUUAGUGCACUGAAGUGCUUGGCCGCAGGGGGAGGGGUGGCUUUUU-------------GGGUGGUCGGUGGUCGGUGGGUGGAAG (((((((((((((....))))...((((((((......((((....))))..((((((..((((((......))))))-------------..))))))))))))))))))))))).. ( -45.70, z-score = -2.10, R) >droEre2.scaffold_4929 827158 110 + 26641161 UUCACUCGCUGCU---CAGCGAAGCGGCCACUUUUAGUGCACUGGAGUGUUUGGCCACAAGG---GGGGUGGGUUUUUGG--GUAGGAGCAGGCUGGGCGGCGGUCGGUGGGUGGAAG (((((((((((((---((((.......((((((((...((((....))))(((....))).)---)))))))(((((...--...)))))..)))))))))))...))))))...... ( -39.30, z-score = -0.28, R) >consensus UCCACUCGCUGCU___CAGCGAAGCGGCCACUUUUAGUGCACUGGAGUGUUUGGUCGCAGAG___GGGGUGGCUUUUUAG_GGGCGGAGCAGGCUGGGCGGUGGUCGGUGGGUGGAAG (((((((((((((....))))...((((((((((((((((((....))))..((((((..........))))))..................)))))).))))))))))))))))).. (-34.22 = -34.54 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:48 2011