| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,553,303 – 16,553,461 |
| Length | 158 |
| Max. P | 0.500000 |
| Location | 16,553,303 – 16,553,461 |
|---|---|
| Length | 158 |
| Sequences | 7 |
| Columns | 173 |
| Reading direction | reverse |
| Mean pairwise identity | 72.99 |
| Shannon entropy | 0.46244 |
| G+C content | 0.42931 |
| Mean single sequence MFE | -41.43 |
| Consensus MFE | -20.36 |
| Energy contribution | -20.16 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 16553303 158 - 27905053 --------GACGUGUGUGUGGG---AUAUUGCCUAAGGGCUGGCAGGAAAAUAUUUAACUUUCACUUUGCUCCCAAACACGGC--AGCUG-UGCGUGCAUUUGAUUAUUCGUGUUUGUACAGCAACGAAAUGAUGGAGUAC-UCGUACUCGUGCCGGAAAAAGUACAAAAUAA --------.((((((...((((---(..(((((........)))))((((.........)))).......))))).))))(((--(((((-((((.((((..((....)))))).))))))))............(((((.-...))))).)))).......))......... ( -47.60, z-score = -1.61, R) >droSim1.chr3R 22606745 145 + 27517382 ---------------------G---AUAUUGCCUAAGGGCUGGCAGGAAAAUAUUUAACUUUCACUUUGCUCCCAAACACGGC--AGCUG-UGCGUGCAUUUGAUUAUUCGUGUUUGUACAGCAACGAAAUGAUGGAGUACUUCGUACUCGUACCGGAAAAAA-GUGAAAUAA ---------------------.---...(((((........))))).............(((((((((..(((...((.((..--.((((-((((.((((..((....)))))).))))))))..))........((((((...))))))))...)))..)))-))))))... ( -42.60, z-score = -2.39, R) >droSec1.super_27 616350 145 + 799419 ---------------------G---AUAUUGCCUAAGGGCUGGCAGGAAAAUAUUUAACUUUCACUUUGCUCCCAAACACGGC--AGCUG-UGCGUGCAUUUGAUUAUUCGUGUUUGUACAGCAGCGAAAUGAUGGAGUACUUCGUACUCGUACCGGAAAAAA-GUGAAAUAA ---------------------.---...(((((........))))).............(((((((((..(((...((...((--.((((-((((.((((..((....)))))).)))))))).)).........((((((...))))))))...)))..)))-))))))... ( -43.80, z-score = -2.35, R) >droEre2.scaffold_4770 12635135 148 + 17746568 --------GACGUGUGUGGGGGGGUAUAUUGCCUAAGGGCAGGCAGGAAAAUAUUUAACUUUCACUUUACUCCCAAACACGGC--AGCUG-UGCGUGCAUUUGAUUAUUCGUGUUUGUACAGCAACGAAGUGAUGGAGUAC-------------CGGAAAAAA-AUAAAAUAA --------..(((((((..(((((((..((((((......))))))((((.........))))....)))))))..))))...--.((((-((((.((((..((....)))))).)))))))).)))......(((....)-------------)).......-......... ( -43.00, z-score = -1.76, R) >droYak2.chr3R 5339793 159 - 28832112 GAUUUGUGGAUGUGUGUGUGGA---AUAUUGCCCAAGGGCAGGCAGGGAAAUAUUUAACUUUCACUUUACUCCCAAACACGGC--AGCUG-UGCGUGCAUUUGAUUAUUCGUGUUUGUACAGCAACAAAAUGAUGGAGUAC-------GAGUAGCGGAAAAAA-AUAAAAUAA ..((((((((.((..((((...---...(((((....)))))........))))...)).)))((((((((((........(.--.((((-((((.((((..((....)))))).))))))))..)........)))))).-------)))).))))).....-......... ( -38.13, z-score = 0.17, R) >dp4.chr2 5888735 138 - 30794189 ------------------UACGUGAAUAUUGCCGAAAGGCAGUCGGGAAUUUAUUUAACUUUCACUUUACUUGAAGCCGCUGCGUGGCAGCUGCGUGCAUUUGAUUAUUCCCGUUUGCACAGCAG---AAUGACGAGAAAC-----------GCCAGACAAACAGAAGAG--- ------------------...(((((.((((((....)))))).(..((.....))..).)))))....((((..(((((...)))))..(((((((((..((........))..))))).))))---.....))))....-----------..................--- ( -38.00, z-score = -1.28, R) >droPer1.super_19 1620720 138 - 1869541 ------------------UACGUGAAUAUUGCCGAAAGGCAGUCAGGAAUUUAUUUAACUUUCACUUUACUUGAAGCCGCUGCGUGGCAGCUGCGUGCAUUUGAUUAUUCCCGUUUGCACAGCAG---AAUGACGAGAAAC-----------GCCAGACAAACAGAAGAG--- ------------------...(((((.((((((....)))))).((............)))))))....((((..(((((...)))))..(((((((((..((........))..))))).))))---.....))))....-----------..................--- ( -36.90, z-score = -1.27, R) >consensus __________________UGGG___AUAUUGCCUAAGGGCAGGCAGGAAAAUAUUUAACUUUCACUUUACUCCCAAACACGGC__AGCUG_UGCGUGCAUUUGAUUAUUCGUGUUUGUACAGCAACGAAAUGAUGGAGUAC_________GUACCGGAAAAAA_GUAAAAUAA ..............................(((....)))...........................((((((......((((...)))).((((((((..(((....)))....))))).)))..........))))))................................. (-20.36 = -20.16 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:38 2011