| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,547,939 – 16,548,056 |
| Length | 117 |
| Max. P | 0.518209 |
| Location | 16,547,939 – 16,548,056 |
|---|---|
| Length | 117 |
| Sequences | 7 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 73.65 |
| Shannon entropy | 0.51272 |
| G+C content | 0.49721 |
| Mean single sequence MFE | -31.10 |
| Consensus MFE | -13.93 |
| Energy contribution | -16.66 |
| Covariance contribution | 2.73 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.518209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16547939 117 + 27905053 GAGCGCAGGAAUUGCACAAGUCGAAAGCGAUACGUGUCCUGGCAUUUGCAUU-UCCCUCCGUAUCGGAUGCCCAUAAGCAGUCGUCCU---UUAUCUCAACUGUCCGUGUGCAUCUGCUCG ((((...((((.((((...((((....))))..((((....)))).)))).)-))).........((((((.(((..(((((.(....---......).)))))..))).)))))))))). ( -35.80, z-score = -2.06, R) >droPer1.super_19 1614257 94 + 1869541 ------------UGCACAAGUCGAAACUGAUACGUGCCUG------UGCAUCGUCUGUCCAUG------GCCCAGAGUCAAAUGCUUA---UCAUCUGAACGGACAGAGUGCAUCGUUGAG ------------.((((..((((....))))..))))..(------(((((..(((((((.((------((.....))))........---((....))..)))))))))))))....... ( -25.80, z-score = -0.39, R) >droAna3.scaffold_13340 10659669 96 - 23697760 ---------GUGUGCACAAAUCGAAACGAAUACGUGCCCA------UGCAUU-CCCAUCC------GAUACCCAAAAGAAAUCGUUCA---UUAUCUCAACUAGUUGUGUGCAUCUUCCCU ---------(((..(((((((((....((((.(((....)------)).)))-).....)------)))........(((....))).---.............)))))..)))....... ( -16.30, z-score = -1.66, R) >droEre2.scaffold_4770 12629646 117 - 17746568 GAGCGCAGGAAUUGCACAAGUCGAACGCGAUACGUGUCCUGGCAUUUGCAUU-UCCCUCCAUUGUGGAUGCCCAUAAGCGGUCUUCCU---UUAUCUCAACUGUCCGUGUGCAUCUGUUCU ((((...((((.((((...((((.(((((...)))))..))))...)))).)-))).........((((((.(((..(((((......---........)))))..))).)))))))))). ( -33.84, z-score = -1.36, R) >droYak2.chr3R 5334216 120 + 28832112 GAGUGCAGGAAUUGCACAAGUCGAACGCGAUACGUGUUCUGGUAUUUGCAUU-UGCCUCCGUAUCGGAUGCCCAUAAGCAGUCCUCCUCCUUUAUCUCAACUGUCCGUGUGCAUCUGUUGU (((.(((((...((((.(..(((((((((...))))))).))..).))))))-)))))).....(((((((.(((..(((((.................)))))..))).))))))).... ( -33.93, z-score = -1.60, R) >droSec1.super_27 610776 117 - 799419 GAGCGCAGGAAUUGCACAAGUCGAAAGCGAUACGUGUCCUGGCAUUUGCAUU-UCGCUCCGUAUCGGAUGCCCAUAAGCAGUCGUCCU---UUAUCUCAACUGUCCGUGUGCAUCUGCUCU (((((((((....((((..((((....))))..))))))))((....))...-.))))).....(((((((.(((..(((((.(....---......).)))))..))).))))))).... ( -36.00, z-score = -1.53, R) >droSim1.chr3R 22601149 117 - 27517382 GAGCGCAGGAAUUGCACAAGUCGAAAGCGAUACGUGUCCUGGCAUUUGCAUU-UCGCUCCGUAUCGGAUGCCCAUAAGCAGUCGUCCU---UUAUCUCAACUGUCCGUGUGCAUCUGCUCU (((((((((....((((..((((....))))..))))))))((....))...-.))))).....(((((((.(((..(((((.(....---......).)))))..))).))))))).... ( -36.00, z-score = -1.53, R) >consensus GAGCGCAGGAAUUGCACAAGUCGAAAGCGAUACGUGUCCUGGCAUUUGCAUU_UCCCUCCGUAUCGGAUGCCCAUAAGCAGUCGUCCU___UUAUCUCAACUGUCCGUGUGCAUCUGCUCU ..((.((((....((((..((((....))))..)))))))))).....................(((((((.(((..(((((.................)))))..))).))))))).... (-13.93 = -16.66 + 2.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:36 2011