| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,541,563 – 16,541,659 |
| Length | 96 |
| Max. P | 0.555489 |
| Location | 16,541,563 – 16,541,659 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 78.97 |
| Shannon entropy | 0.35783 |
| G+C content | 0.45157 |
| Mean single sequence MFE | -28.32 |
| Consensus MFE | -17.16 |
| Energy contribution | -18.08 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.555489 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16541563 96 + 27905053 ------------------UUCUGCGGCAGAAUCUGUUGUUAUUUUUAGCCCUUCAGGAUCCUGCAUUUGGCUCGGGAUUUUUCAGGAAUUCCGGUUGGGUCU-GCAACGCAUUUC---- ------------------...((((((((.((((...((((....))))......)))).))))(((..((.((((((((.....))))))))))..)))..-....))))....---- ( -29.00, z-score = -1.50, R) >droAna3.scaffold_13340 10653355 117 - 23697760 UGAAAGCCCUGUGGUGUGGCUUCUGUUAUUAUGU-UUUUUAUUUUUAGCCAUAUUAUAUUCUGCAUUCGUGGUUGGAUUUC-CAGGAAUUCCGGUUAGGUUUUGCAUCAUGUAUUUCGC .((((....((((((((((((.....((..(...-.)..)).....))))))))))))...((((..(.(((..(((.(((-...))).)))..))).)...)))).......)))).. ( -26.60, z-score = -0.99, R) >droEre2.scaffold_4770 12623007 96 - 17746568 ------------------UUCUGCGGCAGAAUCUGUUGUUAUUUUUAGCCCUUCUGUAUCCAGCAUUUGGCUCGGGAUUUUUCAGGAAUUCCGGUUGGGUCU-GCGUCGCAUUUC---- ------------------...((((((((((...((((.......))))..))))))...(((.(((..((.((((((((.....))))))))))..)))))-)...))))....---- ( -28.90, z-score = -1.97, R) >droYak2.chr3R 5327620 96 + 28832112 ------------------UUCUGCGGAACAAUCUGUUGUUAUUUUUAGCCCAUCUGUAUCCUGCAUUUGGCUCGGGAUUUUUCAGGAAUUCCGGCUGGGUCU-GCACCGCAUUUU---- ------------------...((((((((((....))))).....((((((...(((.....)))...(((.((((((((.....)))))))))))))).))-)..)))))....---- ( -28.60, z-score = -1.74, R) >droSec1.super_27 604459 96 - 799419 ------------------UUCUGCGGCAGAAUCUGUUGUUAUUUUUAGCCCUUCUGUAUCCUGCAUUUGGCUCGGGAUUUUUCAGGAAUUCCGGUUGGGUCU-GCACCGCAUUUC---- ------------------...((((((((((...((((.......))))..))))).....((((((..((.((((((((.....))))))))))..))..)-))))))))....---- ( -28.40, z-score = -1.72, R) >droSim1.chr3R 22594828 96 - 27517382 ------------------UUCUGCGGCAGAAUCUGUUGUUAUUUUUAGCCCUUCUGUAUCCUGCAUUUGGCUCGGGAUUUUUCAGGAAUUCCGGUUGGGUCU-GCACCGCAUUUC---- ------------------...((((((((((...((((.......))))..))))).....((((((..((.((((((((.....))))))))))..))..)-))))))))....---- ( -28.40, z-score = -1.72, R) >consensus __________________UUCUGCGGCAGAAUCUGUUGUUAUUUUUAGCCCUUCUGUAUCCUGCAUUUGGCUCGGGAUUUUUCAGGAAUUCCGGUUGGGUCU_GCACCGCAUUUC____ .....................((((((((((...((((.......))))..)))))......(((((..((.((((((((.....))))))))))..)))...)).)))))........ (-17.16 = -18.08 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:34 2011