Locus 10791

Sequence ID dm3.chr3R
Location 16,496,311 – 16,496,410
Length 99
Max. P 0.765213
window14827 window14828

overview

Window 7

Location 16,496,311 – 16,496,410
Length 99
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 81.12
Shannon entropy 0.31526
G+C content 0.47119
Mean single sequence MFE -25.33
Consensus MFE -17.14
Energy contribution -17.82
Covariance contribution 0.68
Combinations/Pair 1.05
Mean z-score -1.71
Structure conservation index 0.68
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.42
SVM RNA-class probability 0.689322
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 16496311 99 + 27905053
UACUGACUA-CAUAUCUCGGAAUCAAAUCUAACGGUUGCGCUUCGCGGCUCUGAAAAGCGAAACCAUUGGAAAAGCGAAUCCAGAGGAGAAGCGAGUCCA
.........-........(((.((...(((((.((((.(((((..((....))..))))).)))).)))))...((...(((...)))...)))).))). ( -27.20, z-score =  -1.28, R)
>droSim1.chr3R 22549799 100 - 27517382
UACUGACUAACAUAUCUCGGAAUCACAUCUAACGGUUGCGCUUCGCGGCUCUGAAAAGCGAAACCAUUGGAAAAGCGAAUCCAGAGGAAAAGCGAGUCCA
....((((......(((((((.((.(.(((((.((((.(((((..((....))..))))).)))).)))))...).)).))).)))).......)))).. ( -27.92, z-score =  -1.87, R)
>droSec1.super_27 560005 100 - 799419
UACUGACUAACAUAUCUCGGAAUCACAUCUAACGGUUGCGCUUCGCGGCUCUGAAAAGCGAAACCGUUGGAAAAGAGUAUCCAGAGGAAAAGCGAGUACA
.....(((......(((((((.((...((((((((((.(((((..((....))..))))).))))))))))...))...))).)))).......)))... ( -30.02, z-score =  -2.50, R)
>droYak2.chr3R 5291311 82 + 28832112
AACUGACUG-CAUAUCUGGGAAUCGAAUUUAACGGUUGCGCUUCGCGGCUCUGAAAAGCGAAAAGACUGAAAAACCGAAUCCA-----------------
.........-........(((.(((..(((..(((((.(((((..((....))..)))))....))))).)))..))).))).----------------- ( -17.90, z-score =  -0.78, R)
>droEre2.scaffold_4770 12576803 82 - 17746568
GACUGACUA-CAUAUCUCGGAAUCGAAUCUAACGGUUGCGCUUCGCGGCUCUGAAAAGCGAAACCACUGGAUAGGCGAAUCCA-----------------
.........-........(((.(((.(((((..((((.(((((..((....))..))))).))))..)))))...))).))).----------------- ( -23.60, z-score =  -2.11, R)
>consensus
UACUGACUA_CAUAUCUCGGAAUCAAAUCUAACGGUUGCGCUUCGCGGCUCUGAAAAGCGAAACCAUUGGAAAAGCGAAUCCAGAGGA_AAGCGAGU_CA
..................(((.((...(((((.((((.(((((..((....))..))))).)))).))))).....)).))).................. (-17.14 = -17.82 +   0.68)

alignment

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secondary structure

Postscript

dotplot

Postscript

Window 8

Location 16,496,311 – 16,496,410
Length 99
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 81.12
Shannon entropy 0.31526
G+C content 0.47119
Mean single sequence MFE -25.72
Consensus MFE -20.78
Energy contribution -20.94
Covariance contribution 0.16
Combinations/Pair 1.19
Mean z-score -1.35
Structure conservation index 0.81
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.62
SVM RNA-class probability 0.765213
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 16496311 99 - 27905053
UGGACUCGCUUCUCCUCUGGAUUCGCUUUUCCAAUGGUUUCGCUUUUCAGAGCCGCGAAGCGCAACCGUUAGAUUUGAUUCCGAGAUAUG-UAGUCAGUA
..((((((..((((....(((.(((....((.(((((((.((((((.(......).)))))).))))))).))..))).)))))))..))-.)))).... ( -30.30, z-score =  -1.78, R)
>droSim1.chr3R 22549799 100 + 27517382
UGGACUCGCUUUUCCUCUGGAUUCGCUUUUCCAAUGGUUUCGCUUUUCAGAGCCGCGAAGCGCAACCGUUAGAUGUGAUUCCGAGAUAUGUUAGUCAGUA
..((((.((.....(((.(((.((((...((.(((((((.((((((.(......).)))))).))))))).)).)))).))))))....)).)))).... ( -34.30, z-score =  -3.06, R)
>droSec1.super_27 560005 100 + 799419
UGUACUCGCUUUUCCUCUGGAUACUCUUUUCCAACGGUUUCGCUUUUCAGAGCCGCGAAGCGCAACCGUUAGAUGUGAUUCCGAGAUAUGUUAGUCAGUA
..((((.(((....(((.(((...((...((.(((((((.((((((.(......).)))))).))))))).))...)).)))))).......))).)))) ( -27.80, z-score =  -1.75, R)
>droYak2.chr3R 5291311 82 - 28832112
-----------------UGGAUUCGGUUUUUCAGUCUUUUCGCUUUUCAGAGCCGCGAAGCGCAACCGUUAAAUUCGAUUCCCAGAUAUG-CAGUCAGUU
-----------------.(((.(((((((..(.((.....((((((.(......).))))))..)).)..))).)))).)))..(((...-..))).... ( -13.80, z-score =   0.98, R)
>droEre2.scaffold_4770 12576803 82 + 17746568
-----------------UGGAUUCGCCUAUCCAGUGGUUUCGCUUUUCAGAGCCGCGAAGCGCAACCGUUAGAUUCGAUUCCGAGAUAUG-UAGUCAGUC
-----------------.(((.(((...(((.(((((((.((((((.(......).)))))).))))))).))).))).)))..(((...-..))).... ( -22.40, z-score =  -1.15, R)
>consensus
UG_ACUCGCUU_UCCUCUGGAUUCGCUUUUCCAAUGGUUUCGCUUUUCAGAGCCGCGAAGCGCAACCGUUAGAUUUGAUUCCGAGAUAUG_UAGUCAGUA
..................(((.((((...((.(((((((.((((((.(......).)))))).))))))).)).)))).)))..(((......))).... (-20.78 = -20.94 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:31 2011