| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,467,639 – 16,467,732 |
| Length | 93 |
| Max. P | 0.702550 |
| Location | 16,467,639 – 16,467,732 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 71.12 |
| Shannon entropy | 0.63102 |
| G+C content | 0.46073 |
| Mean single sequence MFE | -19.17 |
| Consensus MFE | -10.74 |
| Energy contribution | -10.17 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.702550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16467639 93 - 27905053 CAAGAGUGCUGCAGUGGAUCCCGGUCCCAUUUGCCUACAGCUACCUUGAAAGCCAUCAAAGCGCUCUAAAAUAGAAUGAUUAAAGAACAAAUU--- ..((((((((((((.((((....))))...)))).....(((........)))......))))))))..........................--- ( -21.20, z-score = -1.63, R) >droSim1.chr3R 22517643 93 + 27517382 CAAGAGUGCUGCAGUGGAUCCCGGUCCCAUUUGCCGACAGCUACCUUGAAAGCCAUCAAGGCGCUCUAAAAUAGAAAGUUCAAGAAACAAAUA--- ..((((((((((((.((((....))))...)))).((..(((........)))..))..))))))))..........................--- ( -22.90, z-score = -1.43, R) >droSec1.super_27 530614 93 + 799419 CAAGAGUGCUGCAGUGGAUCCCGGUCCCAUUUGCCGACAGCUACCUUGAAAGCCAUCAAAGCGCUCUAAAAUAGAAGAUUCAAAGAACAUAUA--- ..((((((((((((.((((....))))...)))).((..(((........)))..))..))))))))..........................--- ( -22.90, z-score = -1.95, R) >droYak2.chr3R 5260678 80 - 28832112 CAAGAGUGCUGAAGUGGAUCCCGAUCCCAUUUGCCGACAGCUACCUUAAAGGCCAUCAAAGCGCUCUAAAAGGAAAAAUU---------------- ..((((((((.((((((((....)).))))))...((..(((........)))..))..)))))))).............---------------- ( -19.70, z-score = -1.60, R) >droEre2.scaffold_4770 12547964 92 + 17746568 CAAGAGUGCUGAAGUGGAUCCCUAUCCCAUUUGCCGACAGCUACCUUAAAAGCCAUCAAAGCGCUCUAAAAUUAAAGUUAAAAGGAAUAAUG---- ..((((((((.((((((.........))))))...((..(((........)))..))..)))))))).........................---- ( -19.50, z-score = -2.06, R) >droAna3.scaffold_13340 10581410 93 + 23697760 CAGGAAUGCUGCAGUGGAUCCCGAUCCCACUUUCCUAAAGCCACCUUGUAAGCCAUCAGGGCACUCUG-AAAGAAAAUACUUAUAUUUCAGCUA-- .(((((......(((((((....)).))))))))))..(((..(((((........))))).....((-(((.............)))))))).-- ( -17.12, z-score = 0.61, R) >dp4.chr2 5802781 87 - 30794189 CAGGAGUGCUGCAAAGGAUCCCGAUCCCACUUUCCCAAAGCCACCUUGUAGGCCAUGAGAGCGCUCUGCAAAAAAAGUAAUGAGAGU--------- ..((((((((.....((((....))))........((..(((........)))..))..))))))))....................--------- ( -20.10, z-score = -0.35, R) >droPer1.super_19 1533260 87 - 1869541 CAGGAGUGCUGCAAUGGAUCCCGAUCCCACUUUCCCAAAGCCACCUUGUAGGCCAUGAGAGCGCUCUGCAAACAAAGUAACAAGAUU--------- ..((((((((.....((((....))))........((..(((........)))..))..))))))))....................--------- ( -19.90, z-score = -0.35, R) >droWil1.scaffold_181108 2290011 83 + 4707319 CAGGAGUGUUGCAAUGGAUCCCGAUCCCAUUUUCCCAACGCCACUUUAUAAGCCAUUAAUGCACUCU--AGCAAAAGAA--UAAAGU--------- ...(.((((((.(((((((....)).)))))....)))))))(((((((..((.......))..(((--......))))--))))))--------- ( -13.40, z-score = -0.47, R) >droVir3.scaffold_13047 6957463 92 + 19223366 CAGGAAUGCUGCAGCGGAUCGCGAUCCCAUUUGCCCACGGCCACCUUGUAAGCCAUCAAAGCGCUCUAAAAAUAGAAUACAGAAAGGAGGAU---- ..(((.((((((((.((((....))))...))))....(((..........))).....)))).))).........................---- ( -15.20, z-score = 2.09, R) >droMoj3.scaffold_6540 29540174 86 - 34148556 CAGGAGUGCUGCAGCGGAUCUCGAUCCCAUUUGCCCAGUGCGACCUUGUAGGCCAUUAAAGCACUCUAUGCAAAAUAGAGAGAAAU---------- ..((((((((((((.((((....))))...))))..((((.(.((.....)))))))..))))))))...................---------- ( -21.80, z-score = -0.52, R) >droGri2.scaffold_14830 900469 94 - 6267026 CACGAAUGCUGCAACGGAUCGCGAUCCCAUUUGCCCAGCGCCACCUUAUAGGCCAUCAAGGCACUCU--AGCAAAAAUAUGUAAAAUUAGUAAAUU ......(((((....((((....))))....((((....(((........)))......))))...)--))))....................... ( -16.30, z-score = 0.49, R) >consensus CAGGAGUGCUGCAGUGGAUCCCGAUCCCAUUUGCCCACAGCCACCUUGUAAGCCAUCAAAGCGCUCUAAAAAAAAAAUAUAAAAAAU_________ ..(((.((((.....((((....))))............(((........)))......)))).)))............................. (-10.74 = -10.17 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:28 2011