| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,430,882 – 16,430,972 |
| Length | 90 |
| Max. P | 0.552809 |
| Location | 16,430,882 – 16,430,972 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 76.78 |
| Shannon entropy | 0.43110 |
| G+C content | 0.50729 |
| Mean single sequence MFE | -22.70 |
| Consensus MFE | -14.55 |
| Energy contribution | -14.71 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.552809 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16430882 90 + 27905053 AAGAUGGAUCGCCGGAUCGACUCUAUCCCCGACUGGGAUCCAUGUGCUA-AAAUAAUGUGCACUGCCCUUACACCCAGUCAGAAUCCUCAU ..((.(((((...((((.......))))..(((((((......((((..-.........))))((......))))))))).).)))))).. ( -23.90, z-score = -1.58, R) >droSim1.chr3R 22480075 90 - 27517382 AAGAUGGAUCGCCGGAUCGACUCUAUCCCCGACUGGGAUCCAUGUGCUA-AAAUAAUGUGCACUGCACUUACACCCAGCCAGAAUCCCCUU ...(((((((.((((.(((..........))))))))))))))(.(((.-.......((((...))))........))))........... ( -23.19, z-score = -1.72, R) >droSec1.super_27 494077 90 - 799419 AAGAUGGAUCGCCGGAUCGACUCUAUCCUCGACUGGGAUCCAUGUGCUA-AAAUAAUGUGCACUGCACUUACACCCAGCCAGAAUCCCCUU ...(((((((.((((.((((........)))))))))))))))(.(((.-.......((((...))))........))))........... ( -25.19, z-score = -2.30, R) >droYak2.chr3R 5218941 78 + 28832112 AAGAUGGAUCGCCGGAUCGACU------------GGGAUCCAUGUGCUA-AAAUAAUGUGCGCUGCAGUUACACCCAGUCAGAAUCCCUAU ..(((.((((....))))((((------------(((......((((..-.........))))((......)))))))))...)))..... ( -20.20, z-score = -0.71, R) >droEre2.scaffold_4770 12504433 78 - 17746568 AAGAUGGAUCGCCGGAUCGACU------------GGGAUCCAUGUGCUA-AAAUAAUGUGCGCUGCAGUUACACCCAGCCAGAAUCCCUAU ...(((((((.((((.....))------------)))))))))(..(..-.......)..)((((..........))))............ ( -19.90, z-score = -0.51, R) >droAna3.scaffold_13340 10546530 77 - 23697760 AAGAUGGAUCGCUGGAUCGGCUUCAGU----GCUUGGAUCCGUGUUCGAGAAAUGGUUAGAGCUGCAGCU---CUCGGUCCUGC------- ..........((.((((((...(((..----.(((((((....)))))))...)))..(((((....)))---)))))))).))------- ( -23.80, z-score = 0.02, R) >consensus AAGAUGGAUCGCCGGAUCGACUCUAUC____ACUGGGAUCCAUGUGCUA_AAAUAAUGUGCACUGCACUUACACCCAGCCAGAAUCCCCAU ...(((((((.((((.................)))))))))))((((............))))............................ (-14.55 = -14.71 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:24 2011