| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,422,239 – 16,422,315 |
| Length | 76 |
| Max. P | 0.993058 |
| Location | 16,422,239 – 16,422,315 |
|---|---|
| Length | 76 |
| Sequences | 5 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 59.38 |
| Shannon entropy | 0.69300 |
| G+C content | 0.34698 |
| Mean single sequence MFE | -17.60 |
| Consensus MFE | -7.08 |
| Energy contribution | -9.00 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.59 |
| SVM RNA-class probability | 0.993058 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16422239 76 - 27905053 AAGACAUGACUUCAUGAAUAUGUAUGUACGACAAGCGUUCGUACAUACGUAUUUAUGGGAGUAUUAAAUAUGGCCU ........(((((((((((((((((((((((.......)))))))))))))))))).))))).............. ( -27.00, z-score = -5.00, R) >droWil1.scaffold_181108 2241866 63 + 4707319 ------------CAUACAUACACCUAUG-AAUGAAUGUUUCUUUGUAGAUGUAUGUGUGGAAUGUAGAUUUUGCUU ------------((((((((((.(((..-((.((.....))))..))).))))))))))................. ( -17.90, z-score = -3.52, R) >droSim1.chr3R 22470993 76 + 27517382 AAGACACGACUUCAUGCAUAUGUAUGUACAACAAGCGUACGUACAUACGUAUUUAUGGGAGUAUUAAAUAUGGCCU ........((((((((.((((((((((((.((....))..)))))))))))).))).))))).............. ( -19.10, z-score = -1.82, R) >droSec1.super_27 485319 70 + 799419 ------UGACUUCAUGCAUAUAUAUGUACAACAAGCGUACGUACAUACGUAUUUAUGGGAGUAUUAAAUAUGGCCU ------..((((((((.(((..(((((((.((....))..)))))))..))).))).))))).............. ( -14.00, z-score = -0.52, R) >droYak2.chr3R 5210323 57 - 28832112 -------------------AAGACCCGGCUUCAUGCAUAUGUAUGUACUUAUUUAUGGGAGUUUAAAAUAUGGUCU -------------------.(((((......(((((....))))).((((........)))).........))))) ( -10.00, z-score = -0.16, R) >consensus _______GACUUCAUGCAUAUGUAUGUACAACAAGCGUACGUACAUACGUAUUUAUGGGAGUAUUAAAUAUGGCCU ............((((.((((((((((((...........)))))))))))).))))................... ( -7.08 = -9.00 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:23 2011