| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,389,784 – 16,389,859 |
| Length | 75 |
| Max. P | 0.864572 |
| Location | 16,389,784 – 16,389,859 |
|---|---|
| Length | 75 |
| Sequences | 7 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 73.40 |
| Shannon entropy | 0.51604 |
| G+C content | 0.49712 |
| Mean single sequence MFE | -20.56 |
| Consensus MFE | -7.63 |
| Energy contribution | -8.81 |
| Covariance contribution | 1.18 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.864572 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16389784 75 + 27905053 CCGCGGCCACUUUUAUCGUCACUGA-AAGUGGCCCUCCAU-------CCAAAAGUCGUCGGAAGCUCGUAGUCUUAUCUCUUU ..(((((((((((((.......)))-)))))))).(((..-------(........)..))).)).................. ( -19.60, z-score = -2.54, R) >droYak2.chr3R 5175720 75 + 28832112 CCGCGGCCACUUUUAUCGUCACUGA-AAGUGGCCCUCCAU-------CCAAAAUUCGUCGGAAGCUCGUAUUCUUAUCUCUUU ..(((((((((((((.......)))-)))))))).(((..-------(........)..))).)).................. ( -19.60, z-score = -3.31, R) >droAna3.scaffold_13340 10512310 83 - 23697760 CCGGGGGAACUUUUAUCGGCACUGACAAGAGACCCUCCAUUGGAACACAAAACAGCCUACAGAGGGGGUUCUCUUAUCUUUUC ((((..((...))..))))....((.((((((.(((((.(((.................))).))))).)))))).))..... ( -20.03, z-score = -0.05, R) >droWil1.scaffold_181108 2202435 67 - 4707319 CAACGGAGAGCUUUAACUGUACUGAAUGGUGG----------------GGGAGACCCUCAAGAGCUUCUUCUCCUCCUUACUU ....((((((((((.(((((.....)))))((----------------((....))))..)))))....)))))......... ( -20.00, z-score = -0.83, R) >droEre2.scaffold_4770 12462404 75 - 17746568 CCGCGGCCACUUUUAUCGUCACUGA-AAGUGGCCCUCCGU-------CCAAAAGUCGUCGGAAGCUCGUAGUCUUAUCUCUUU ..(((((((((((((.......)))-)))))))).((((.-------(........).)))).)).................. ( -22.70, z-score = -3.36, R) >droSec1.super_27 452860 75 - 799419 CCGCGGCCACUUUUAUCGUCACUGA-AAGUGGCCCUCCAU-------CCAAAAGUCGUUGGAAGCUAGUAGUCUUAUCUCUUU ..(((((((((((((.......)))-)))))))).....(-------((((......))))).)).................. ( -22.40, z-score = -3.53, R) >droSim1.chr3R 22436886 75 - 27517382 CCGCGGCCACUUUUAUCGUCACUGA-AAGUGGCCCUCCAU-------CCAAAAGUCGUCGGAAGCUCGUUGUCUUAUCUCUUU ..(((((((((((((.......)))-)))))))).(((..-------(........)..))).)).................. ( -19.60, z-score = -2.49, R) >consensus CCGCGGCCACUUUUAUCGUCACUGA_AAGUGGCCCUCCAU_______CCAAAAGUCGUCGGAAGCUCGUAGUCUUAUCUCUUU ....((((((((...((......)).))))))))................................................. ( -7.63 = -8.81 + 1.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:15 2011