| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,369,346 – 16,369,440 |
| Length | 94 |
| Max. P | 0.595713 |
| Location | 16,369,346 – 16,369,440 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 88.78 |
| Shannon entropy | 0.17194 |
| G+C content | 0.47192 |
| Mean single sequence MFE | -23.35 |
| Consensus MFE | -21.05 |
| Energy contribution | -20.80 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.595713 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16369346 94 - 27905053 UGGCACAUUAGA--GGCAUCCG-AAGCAAACCAGAACCUUGAACCACUUUACUGUGGACUAAAAA-UGCCGAAGGGCACAAAAAGAAAG--------AGCAGCCAG ((((...((((.--.((.....-..))................((((......)))).))))...-((((....))))...........--------....)))). ( -22.40, z-score = -1.77, R) >droSim1.chr3R 22416702 96 + 27517382 UGGCACAUUAGA--GGCAUCCGAAAGCAAACCAGAACCUUGAACCACUUUACUGUGGACUAAAAAGUGCCGAAGGGCAGAAAAAGAAAG--------AGCAGCCGG .(((...((((.--((....(....)....))...........((((......)))).))))....((((....))))...........--------....))).. ( -23.70, z-score = -1.44, R) >droSec1.super_27 433014 96 + 799419 UGGCACAUUAGA--GGCAUCCAAAAGCAAACCAGAACCUUGAACCACUUUACUGUGGACUUAAAAGUGCCGAAGGGCAGAAAAAGAAAG--------AGCAGCCGG .(((........--((...))....((................((((......)))).........((((....))))...........--------.)).))).. ( -21.40, z-score = -0.56, R) >droEre2.scaffold_4770 12441409 106 + 17746568 UGGCAUGUUAGAGGGGCAUCCAAGAGCAAAUCAGAACCUUGAACCACUUUACUGUGGACUACAAAGUGCCGAGGGGCAGAAAAAGAAAGAAAAGAACAGCAGCCAG ((((.((((.((...((........))...)).(..(((((..((((......))))(((....)))..)))))..)....................)))))))). ( -25.90, z-score = -1.04, R) >consensus UGGCACAUUAGA__GGCAUCCAAAAGCAAACCAGAACCUUGAACCACUUUACUGUGGACUAAAAAGUGCCGAAGGGCAGAAAAAGAAAG________AGCAGCCAG ((((..........((...))....((................((((......)))).........((((....))))....................)).)))). (-21.05 = -20.80 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:12 2011