Locus 10773

Sequence ID dm3.chr3R
Location 16,348,445 – 16,348,548
Length 103
Max. P 0.727092
window14800 window14801

overview

Window 0

Location 16,348,445 – 16,348,548
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 83.62
Shannon entropy 0.31736
G+C content 0.51579
Mean single sequence MFE -30.90
Consensus MFE -22.66
Energy contribution -23.88
Covariance contribution 1.22
Combinations/Pair 1.12
Mean z-score -1.57
Structure conservation index 0.73
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.52
SVM RNA-class probability 0.727092
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 16348445 103 + 27905053
ACCAUUCCUUGAGUUCCCAUCCAAGUCACCAACGUGAAGUUCGCUUUGCACAUUUGUGCUGAGCACUGAGGACCCUUGAGCAGUUUUCAGCUCUUGCCCGGAA
.((..(((((.(((...........((((....)))).....((((.((((....)))).)))))))))))).....((((........))))......)).. ( -27.50, z-score =  -1.07, R)
>droSim1.chr3R 22396224 103 - 27517382
ACCAUUUCUUGAAUUCCCAUCCAAGUCACCAACGUGAAGUUCGCUUUGCACAUUUGUGCUGAGCACUGAGGACCCUUGAGCAGUUUUCAGCUCUUGGCCGGGA
..............((((..(((((((((....)))).....((((.((((....)))).)))).((((((((.........))))))))..)))))..)))) ( -32.10, z-score =  -1.86, R)
>droSec1.super_27 412061 103 - 799419
ACCAUUUCUUGAAUUCCCAUCCAAGUCACCAACGUGAAGUUCGCUUUGCACAUUUGUGCUGAGCACUGAGGGCCCUUGAGCAGUUUCCAGCUCUUGGCCGGGA
..............((((.......((((....)))).....((((.((((....)))).))))......((((...((((........))))..)))))))) ( -33.70, z-score =  -1.71, R)
>droYak2.chr3R 5130991 103 + 28832112
CCCCUUCCUUGAAUUUCCAUCCAAGUCACCAAUGUGAAGUUCGCUUUGCACAUUUGUGCUGAGCUCUGAGGACCCUUGAGCAGCUUUCAGCUCUUGGCCGGGA
.(((.(((((((((((((((...........))).)))))))((((.((((....)))).))))...))))).((..((((........))))..))..))). ( -35.90, z-score =  -2.65, R)
>droEre2.scaffold_4770 12420617 103 - 17746568
CCCCUUCCUUGAAUUCCCAUCCAAGUCACCAAUGUGAAGUUCGCUUUGCACAUUUGUGCUGAGCACUGAGGGCCCUUGAGCAGCAUUCAGCUCUUGGCCGGGA
.(((...((((((((..........((((....)))))))))((((.((((....)))).))))...)))((((...((((........))))..))))))). ( -34.20, z-score =  -1.49, R)
>droAna3.scaffold_12911 2654512 79 - 5364042
-------------CCUCCGUCCAAGCCACGACUGUGAAGUUCGCUUUGCACAUUUGGGCUAAG-------AACCCUUGAGCAGUUCU-AGCUCUUGGCAG---
-------------...........((((....((..(((....)))..)).....((((((.(-------(((.........)))))-))))).))))..--- ( -22.00, z-score =  -0.64, R)
>consensus
ACCAUUCCUUGAAUUCCCAUCCAAGUCACCAACGUGAAGUUCGCUUUGCACAUUUGUGCUGAGCACUGAGGACCCUUGAGCAGUUUUCAGCUCUUGGCCGGGA
..............((((.(((...((((....)))).....((((.((((....)))).)))).....))).((..((((........))))..))..)))) (-22.66 = -23.88 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 16,348,445 – 16,348,548
Length 103
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 83.62
Shannon entropy 0.31736
G+C content 0.51579
Mean single sequence MFE -33.20
Consensus MFE -24.74
Energy contribution -25.93
Covariance contribution 1.20
Combinations/Pair 1.12
Mean z-score -1.32
Structure conservation index 0.75
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.18
SVM RNA-class probability 0.579379
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 16348445 103 - 27905053
UUCCGGGCAAGAGCUGAAAACUGCUCAAGGGUCCUCAGUGCUCAGCACAAAUGUGCAAAGCGAACUUCACGUUGGUGACUUGGAUGGGAACUCAAGGAAUGGU
((((......((((........))))..((((.((((.((((..((((....))))..))))....((((....))))......)))).))))..)))).... ( -31.10, z-score =  -0.58, R)
>droSim1.chr3R 22396224 103 + 27517382
UCCCGGCCAAGAGCUGAAAACUGCUCAAGGGUCCUCAGUGCUCAGCACAAAUGUGCAAAGCGAACUUCACGUUGGUGACUUGGAUGGGAAUUCAAGAAAUGGU
(((((.(((((.(((((..(((.......)))..)))))(((..((((....))))..))).....((((....))))))))).))))).............. ( -33.10, z-score =  -1.39, R)
>droSec1.super_27 412061 103 + 799419
UCCCGGCCAAGAGCUGGAAACUGCUCAAGGGCCCUCAGUGCUCAGCACAAAUGUGCAAAGCGAACUUCACGUUGGUGACUUGGAUGGGAAUUCAAGAAAUGGU
((((((((..((((.(....).))))...))))((.((((((..((((....))))..)))......(((....)))))).))..)))).............. ( -36.70, z-score =  -1.91, R)
>droYak2.chr3R 5130991 103 - 28832112
UCCCGGCCAAGAGCUGAAAGCUGCUCAAGGGUCCUCAGAGCUCAGCACAAAUGUGCAAAGCGAACUUCACAUUGGUGACUUGGAUGGAAAUUCAAGGAAGGGG
.(((((((..((((........))))...)))).((...(((..((((....))))..))).....((((....))))(((((((....))))))))).))). ( -36.80, z-score =  -2.00, R)
>droEre2.scaffold_4770 12420617 103 + 17746568
UCCCGGCCAAGAGCUGAAUGCUGCUCAAGGGCCCUCAGUGCUCAGCACAAAUGUGCAAAGCGAACUUCACAUUGGUGACUUGGAUGGGAAUUCAAGGAAGGGG
.(((((((..((((........))))...)))).((..((((..((((....))))..))))....((((....))))(((((((....))))))))).))). ( -38.00, z-score =  -1.68, R)
>droAna3.scaffold_12911 2654512 79 + 5364042
---CUGCCAAGAGCU-AGAACUGCUCAAGGGUU-------CUUAGCCCAAAUGUGCAAAGCGAACUUCACAGUCGUGGCUUGGACGGAGG-------------
---(((((((((((.-......))))..((((.-------....))))......((...((((.((....)))))).)))))).)))...------------- ( -23.50, z-score =  -0.35, R)
>consensus
UCCCGGCCAAGAGCUGAAAACUGCUCAAGGGUCCUCAGUGCUCAGCACAAAUGUGCAAAGCGAACUUCACAUUGGUGACUUGGAUGGGAAUUCAAGGAAUGGU
....((((..((((........))))...))))......(((..((((....))))..))).....((((....))))(((((((....)))))))....... (-24.74 = -25.93 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:08 2011