| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,333,659 – 16,333,769 |
| Length | 110 |
| Max. P | 0.807804 |
| Location | 16,333,659 – 16,333,769 |
|---|---|
| Length | 110 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 71.26 |
| Shannon entropy | 0.63054 |
| G+C content | 0.55596 |
| Mean single sequence MFE | -36.74 |
| Consensus MFE | -20.05 |
| Energy contribution | -19.62 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807804 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16333659 110 - 27905053 UGGAUCCCACGUGGUCGGUGGUGAGUCUGACCAUUGCCGUGGGCUUGGGUGCCUUCGCCUGGUCUGGAUUUGCGUGAGUGUUAAUUU-UCCCCAAAGGGGGGAGAUCCCUU .(((((.((((..(((((..(((........)))..))..(((((.(((((....)))))))))).)).)..))))..........(-(((((....)))))))))))... ( -41.80, z-score = -0.65, R) >droAna3.scaffold_12911 2643609 104 + 5364042 UGGAUCCCACCUGGUCGGUGGUGUGCUUGACCAUUGCCGUGGGCUUAGGUGCCUUUGCCUGGUCCGGAUUUGCGUGAGUGUCU-----UGGGCAGACAGGAGCUCUUCA-- .((((((.....((.(((((((.......)))))))))..(((((.((((......)))))))))))))))....((((.(((-----((......)))))))))....-- ( -36.50, z-score = 0.56, R) >droEre2.scaffold_4770 12409008 109 + 17746568 UGGAUCCCACGUGGUCGGUGGUGAGUCUGACCAUAGCCGUGGGCUUGGGUGCCUUCGCCUGGUCUGGAUUCGCGUGAGUUUUUAUUC-UUCCCGAA-GGCGGAAAUUCCUC .(((.....(((..((((.((((((((((((((..((...((((......))))..)).))))).))))))))..((((....))))-..))))).-.))).....))).. ( -40.00, z-score = -1.02, R) >dp4.chr2 15492371 98 - 30794189 UGGAUCCCACCUGGUCGGUGGUGAGUCUCACUAUUGCUGUGGGACUGGGUGCCUUUGCUUGGUCCGGCUUUGCGUAAGUAUUU---------CAA--CGAGAAUUUCCC-- .((((((((((.....))))).)).((((.........((.((((..(((......)))..)))).))..(((....)))...---------...--.))))...))).-- ( -34.60, z-score = -1.64, R) >droPer1.super_0 6902309 98 + 11822988 UGGAUCCCACCUGGUCGGUGGUGAGUCUCACUAUUGCUGUGGGACUGGGUGCCUUUGCCUGGUCCGGCUUUGCGUAAGUAUUU---------CAA--CGAGAAUUUUCC-- .((((((((((.....))))).)).((((.........((.((((..(((......)))..)))).))..(((....)))...---------...--.))))....)))-- ( -35.70, z-score = -1.98, R) >droYak2.chr3R 5115884 108 - 28832112 UGGAUCCCACGUGGUCGGUGGUGAGUCUGACCAUUGCCGUGGGCUUGGGUGCCUUCGCCUGGUCUGGAUUCGCGUGAGUUACUAUU--UCCCCAAA-GGGGAAUAUCCCUC .(((((((...(((..(((((((((((((((((..((...((((......))))..)).))))).))))))((....)).))))))--...)))..-.))))...)))... ( -39.90, z-score = -0.74, R) >droSim1.chr3R 22377147 109 + 27517382 UGGAUCCCACGUGGUCGGUGGUGAGUCUGACCAUUGCUGUGGGCUUGGGUGCCUUCGCCUGGUCUGGAUUUGCGUGAGUGUUCAUUU-UCCCCGAA-GGGGGAGAUCCCUU .(((((((((((((((((........))))))))....))))..(..((((....))))..)..(((((..((....)))))))...-(((((...-.))))))))))... ( -43.40, z-score = -1.22, R) >droSec1.super_27 400044 109 + 799419 UGGAUCCCACGUGGUCGGUGGUGAGUCUGACCAUUGCUGUGGGCUUGGGUGCCUUCGCCUGGUCUGGAUUUGCGUGAGUGUUCAUUU-UCCCCGAA-GGGGGAGAUCCCUU .(((((((((((((((((........))))))))....))))..(..((((....))))..)..(((((..((....)))))))...-(((((...-.))))))))))... ( -43.40, z-score = -1.22, R) >droWil1.scaffold_181108 2135781 88 + 4707319 UGGAUCCCACCUGGUCGGUGGUCUGCCUAACCAUUGCGGUGGGCUUGGGUGCAUUUGCGUGGUCUGGUUUUGCGUAAGUCACACACC-U---------------------- .((..((((((..(.(((((((.......))))))))))))))..((.(((.(((((((..(.......)..)))))))))).))))-.---------------------- ( -30.90, z-score = -0.13, R) >droVir3.scaffold_13047 8732358 100 + 19223366 UGGAUCCCACUUGGUCGGUUGUUUUUAUUACAAUUGCCGUCGGCCUGGGCGCCUUUGCUUGGUCCGGAUUCGCGUAAGUUGCCACA--AAUGCAGCUGUCAG--------- .((((((.....((.(((((((.......)))))))))...((.(..((((....))))..).)))))))).....((((((....--...)))))).....--------- ( -31.80, z-score = -0.68, R) >droMoj3.scaffold_6540 5526153 102 + 34148556 UGGAUCCCACUUGGUCGGUGAUAUUCAUUACAAUUGCUGUCGGCCUGGGCGCCUUUGCCUGGUCUGGAUUCGCGUAAGUUGCAACGUCAGUGCAGCCCCCAG--------- .((((((......(.(((..((..........))..))).)((((.(((((....))))))))).))))))......((((((.(....)))))))......--------- ( -30.30, z-score = 0.51, R) >droGri2.scaffold_14624 4020801 103 + 4233967 UGGAUCCCACUUGGUCCGUCGUAUUCAUAACAAUUGCUGUGGGCCUGGGAGCAUUUGCGUGGUCAGGAUUCGCGUAAGUUGCAACAU-AUUGCAUCCCUUACAG------- .((((((((...((((((..(((...........)))..)))))))))))((((((((((((.......))))))))).))).....-......))).......------- ( -32.60, z-score = -1.26, R) >consensus UGGAUCCCACGUGGUCGGUGGUGAGUCUGACCAUUGCUGUGGGCUUGGGUGCCUUUGCCUGGUCUGGAUUUGCGUAAGUUUCUAUU__UCCCCAAA_GGGGGAGAUCCC__ .(((.(((((..((.(((((((.......)))))))))))))).(((((((....))))))))))......((....))................................ (-20.05 = -19.62 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:04 2011