Locus 10768

Sequence ID dm3.chr3R
Location 16,328,956 – 16,329,059
Length 103
Max. P 0.850394
window14793

overview

Window 3

Location 16,328,956 – 16,329,059
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 93.59
Shannon entropy 0.11097
G+C content 0.35340
Mean single sequence MFE -25.00
Consensus MFE -19.76
Energy contribution -19.76
Covariance contribution -0.00
Combinations/Pair 1.15
Mean z-score -2.39
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.91
SVM RNA-class probability 0.850394
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 16328956 103 - 27905053
GCGGGCCAACUAUAUAACUAACUGUUUAACUUCUAAACUGGAGCUUAACUCCCAACGAGUUGGCCGCAAUAAAUAAAGUUUAUAAAGAUUUUGAGCAUUUAAA
((.((((((((............(((((.....))))).((((.....)))).....))))))))........((((((((....)))))))).))....... ( -25.10, z-score =  -2.95, R)
>droEre2.scaffold_4770 12403935 103 + 17746568
GCGGGCCAACAAUAUAACUAACUAUGUAACUUUUAAGCUGGGGCUUAACUCUCAACGAGUUGGGCGCAAUAAAUAAAGUUUAUAAAGAUUUUGGGCAUUUAAA
...(.((((..(((((......)))))..((((((((((.(.(((((((((.....))))))))).).........)))))).))))...)))).)....... ( -24.20, z-score =  -2.16, R)
>droYak2.chr3R 5109773 103 - 28832112
ACGGGCCAACAAUAUAAUUAACUAUAUAACUUUUAAGCUGGGGCUUAACUCCCAACGAGUUGGCCGCCAUAAAUAAAGUUUAUAAAGAUUUUGGGUAUUUAAA
...(((((((.(((((......))))).........(.(((((......))))).)..)))))))...(((..((((((((....))))))))..)))..... ( -24.00, z-score =  -1.48, R)
>droSec1.super_27 396115 103 + 799419
GCGGGCCAACUAUAUAACUAACUGUUUAACUUCUAAACUGGGGCUUAACUCCCAACGAGUUGGCCGCAAUAAAUAAAGUUUAUAAAGAUUUUGAGCAUUUAAA
((.((((((((............(((((.....)))))(((((......)))))...))))))))........((((((((....)))))))).))....... ( -26.40, z-score =  -2.83, R)
>droSim1.chr3R 22373246 103 + 27517382
GCGGGCCAACUAUAUAACUAACUGUAUAACUUCUAAACUGGGGCUUAACUCCCAACGAGUUGGCCGCAAUAAAUAAAGUUUAUAAAGAUUUUGAGCAUUUAAA
((.(((((((((((((......)))))...........(((((......)))))...))))))))........((((((((....)))))))).))....... ( -25.30, z-score =  -2.51, R)
>consensus
GCGGGCCAACUAUAUAACUAACUGUAUAACUUCUAAACUGGGGCUUAACUCCCAACGAGUUGGCCGCAAUAAAUAAAGUUUAUAAAGAUUUUGAGCAUUUAAA
((.(((((((.(((((......)))))...........(((((......)))))....)))))))........((((((((....)))))))).))....... (-19.76 = -19.76 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:02 2011