| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,324,912 – 16,325,010 |
| Length | 98 |
| Max. P | 0.523888 |
| Location | 16,324,912 – 16,325,010 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 60.16 |
| Shannon entropy | 0.70602 |
| G+C content | 0.37265 |
| Mean single sequence MFE | -19.15 |
| Consensus MFE | -7.43 |
| Energy contribution | -6.20 |
| Covariance contribution | -1.23 |
| Combinations/Pair | 1.87 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523888 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16324912 98 + 27905053 CAAAAUGUAAUU----AACUUUGUAGCGACAAAUGCCUGCAUACCGGCAUAUGCCUGAAAAAGUGCUGAAAAGUUGCUCACAUUUUGGCCAGAACUUAAGCG----------------- ((((((((.(.(----((((((.(((((.((.(((((........))))).)).((.....))))))).))))))).).))))))))...............----------------- ( -24.00, z-score = -1.45, R) >droPer1.super_0 6896257 110 - 11822988 UUAAACGUAAUU----AACUUCUGAAC-ACAAAUGGUCACG----GCCAAAUGGAUAAAAUGAGCUUCAGAGGUAAGACCACCCCUGCUUUUAAUUUUUUUUUUUGUUGAGCUUAAACG .....(((....----.(((((((((.-.((..((((....----))))..))............)))))))))............((((.(((.........)))..))))....))) ( -16.04, z-score = 0.82, R) >dp4.chr2 15486256 110 + 30794189 UUAAAUGUAAUU----AACUUCUGAGC-ACAAAUGGUCACG----GCCAAAUGGAUAAAAGGAGCUUCAGGAGUAAGACCACCCCUGCUUUUAUUUUUUUUUUUUGUUGAGCUUAAACG ............----......(((((-.(((.((((....----))))...(((((((((......((((.((......)).)))))))))))))..........))).))))).... ( -20.00, z-score = 0.31, R) >droAna3.scaffold_12911 2638168 84 - 5364042 CGAAAUGUAAUU----AACUUUCAAGCAGAAACCGCCUCU-----GGCAAAUGGUCGGAAAGA-GCUGAAAAGUUUCCCUUAUAC--------ACUUAAACA----------------- .....(((((..----((((((..(((.....(((((...-----.......)).))).....-)))..))))))....))))).--------.........----------------- ( -14.00, z-score = -0.20, R) >droEre2.scaffold_4770 12399783 91 - 17746568 CAAAAUGUAAAU----AACUUUGUAGCGACAAAUGUCUGG-----AGCAGAUGACUGAAAGA--GCUGAAAAGUAUCUCACAUUUUGGCCAGAACUUAAGAG----------------- ((((((((....----.(((((.(((((((....)))...-----..(((....))).....--)))).))))).....))))))))...............----------------- ( -19.10, z-score = -1.26, R) >droYak2.chr3R 5105770 91 + 28832112 CAAAAUGUAAUA----AACUUUGUAGUGACAAAUGUCUGG-----AGCAGAUGACUGAAAGA--GCUAAAAAGUAUCUCACAUCUUGGCCAGAACUUAAAUG----------------- ............----...(((((....)))))..(((((-----...(((((..(((..((--(((....))).))))))))))...))))).........----------------- ( -14.40, z-score = 0.02, R) >droSec1.super_27 392134 93 - 799419 CAAAAUGUAAUU----AACUUUGUAGCGACAAAUGUCUGC-----GGCAUAUGCCUGAAAAAUUGCUGAAAAGUUGCUUACAUUUUGCCCAGAACUUAAACG----------------- ((((((((((.(----((((((.(((((((....)))...-----(((....))).........)))).))))))).))))))))))...............----------------- ( -27.70, z-score = -4.83, R) >droSim1.chr3R 22369220 97 - 27517382 CAAAAUGUAAUUUAAUAACUUUGCAGCGACAAAUGUCUGC-----GACAUAUGCCUGAAAAAGUGCUGAAAAGUUGCUUACCUUUUGGCCAGAACUUAAACG----------------- (((((.((((.....(((((((.(((((.((.(((((...-----))))).)).((.....))))))).))))))).)))).)))))...............----------------- ( -18.00, z-score = -0.87, R) >consensus CAAAAUGUAAUU____AACUUUGUAGCGACAAAUGUCUGC_____GGCAAAUGCCUGAAAAAA_GCUGAAAAGUAGCUCACAUUUUGGCCAGAACUUAAACG_________________ .................(((((.((((..((..((((........))))..))...........)))).)))))............................................. ( -7.43 = -6.20 + -1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:01 2011