| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,320,662 – 16,320,757 |
| Length | 95 |
| Max. P | 0.895603 |
| Location | 16,320,662 – 16,320,757 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 73.50 |
| Shannon entropy | 0.50134 |
| G+C content | 0.49764 |
| Mean single sequence MFE | -27.35 |
| Consensus MFE | -15.90 |
| Energy contribution | -15.37 |
| Covariance contribution | -0.53 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.895603 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16320662 95 - 27905053 --------------------GACUGGUCACGUCGUAAUCAGCAAAAGGUUUCGCCUAGUUGCGGCUGUAAACUCGGCUACGUGACUCCCAUGGU-UGAUGAGCCAGAAAACGUUCC-- --------------------....((((((((........((((.(((.....)))..))))(((((......)))))))))))))....((((-(....)))))...........-- ( -27.60, z-score = -0.89, R) >droPer1.super_0 6892516 97 + 11822988 --------------------GUCUGGUCACGUCCUAAUCAGCAAAAGGUUUCUCCUAGUUGCGGUUAUAAAGUCGGCUACGUGACUCGCAUUUC-CAAUGAUCCCCCAACAGCGUUCA --------------------(.(((((((((((((((((.((((.(((.....)))..))))))))).......))..)))))))...(((...-..))).........))))..... ( -19.81, z-score = -0.50, R) >dp4.chr2 15482557 97 - 30794189 --------------------GUCUGGUCACGUCCUAAUCAGCAAAAGGUUUCUCCUAGUUGCGGUUAUAAAGUCGGCUACGUGACUCGCAUUUU-CAAUGAUCCCCCAACAGCGUUCA --------------------(.(((((((((((((((((.((((.(((.....)))..))))))))).......))..)))))))...(((...-..))).........))))..... ( -19.81, z-score = -0.53, R) >droAna3.scaffold_12911 2634694 90 + 5364042 -----------------GACUGGCGGUCACGUCGUAAUCAGCAAAAGGUUUCGUCUAGUUGCGGUUGUAAAGUCGCCUACGUGACUCCAAUCCG-CAAUGAGACUUCU---------- -----------------((((((((....))))((.....))....))))..((((.((((((((((...((((((....)))))).))).)))-)))).))))....---------- ( -29.30, z-score = -2.44, R) >droEre2.scaffold_4770 12395056 95 + 17746568 --------------------GACUGGUCACGUCGUAAUCAGCAAAAGGUUUCGCCUAGUUGCGGCUGUAAAGUCGGCUACGUGACUCCCAUGGU-UGAUGAGCCUGAAAACGUUCC-- --------------------((((((((((((.((.....((((.(((.....)))..))))((((....)))).)).)))))))).....)))-)...((((.(....).)))).-- ( -27.40, z-score = -0.80, R) >droYak2.chr3R 5101256 95 - 28832112 --------------------GACUGGUCACGUCGUAAUCAGCAAAAGGUUUCGCGUAGUUGCGGCUGUAAACUCGACUACGUGACUCUCAUGGC-UGAUGAGCUAGAAAACGUUCC-- --------------------(((.......)))...((((((....((..(((((((((((.(........).)))))))))))..))....))-))))((((........)))).-- ( -30.90, z-score = -2.00, R) >droSec1.super_27 387737 95 + 799419 --------------------GACUGGUCACGUCGUAAUCAGCAAAAGGUUUCGCCUAGUUGCGGCUGUAAACUCGCCUACGUGACUCCCAUGGU-UGAUGAGCCAGAAAACGUUCC-- --------------------....((((((((........((((.(((.....)))..))))(((.........))).))))))))....((((-(....)))))...........-- ( -25.20, z-score = -0.45, R) >droSim1.chr3R 22362876 95 + 27517382 --------------------GACUGGUCACGUCGUAAUCAGCAAAAGGUUUCGCCUAGUUGCGGCUGUAAACUCGGCUACGUGACUCCCAUGGU-UGAUGAGCCAGAAAACGUUCC-- --------------------....((((((((........((((.(((.....)))..))))(((((......)))))))))))))....((((-(....)))))...........-- ( -27.60, z-score = -0.89, R) >droMoj3.scaffold_6540 5516605 89 + 34148556 ---------------------GCUGGUCACGUCGUAAUCAGCAAAAGG-UUCGCCUAGUUGCGGUUAUAAAGCCGUGUACGUGAUUCGCAUCUC-GGAUGCGAAAACGUUCG------ ---------------------((((((.((...)).))))))...(((-....)))....((((((....))))))(.((((..((((((((..-.)))))))).)))).).------ ( -30.00, z-score = -2.34, R) >droVir3.scaffold_13047 8723682 89 + 19223366 ---------------------ACUGGUCACGUCGUAAUCAGCAAAAGG-UUCGCCUAGUUGUGGUUAUAAAGCCGCGCACGUGACCCGCAUUUC-GUAUGCGAAAACGUUCG------ ---------------------...(((((((((((.....((((.(((-....)))..))))((((....))))))).))))))))(((((...-..)))))..........------ ( -30.50, z-score = -2.54, R) >droGri2.scaffold_14624 4011932 91 + 4233967 --------------------CGUUGGUCACGUUGUAAUCAGCAAAAGGUUUCGCCUAGUUGCGGUUAUAAAGCCGCGCACGUGAUCCGCAUCCC-GUAUGCGAAAACGUUCG------ --------------------((((((((((((((....))))...(((.....))).(((((((((....))))))).))))))))(((((...-..)))))..))))....------ ( -29.90, z-score = -2.18, R) >droWil1.scaffold_181108 2123312 110 + 4707319 AGAGGGCAGACCAUGGGUAUAAAUGGUCACGUCGUAAUCAGCAAAAGG-UUCGCCUAGUUGCGGUUAUAAAGUCACCUACGUGACUUACAUUUCAAAAUGCAAAAAAGGCU------- .....(((((((((........)))))).....((((((.((((.(((-....)))..)))))))))).(((((((....)))))))...........)))..........------- ( -30.20, z-score = -2.27, R) >consensus ____________________GACUGGUCACGUCGUAAUCAGCAAAAGGUUUCGCCUAGUUGCGGUUAUAAAGUCGCCUACGUGACUCCCAUGGC_UGAUGAGCCAGAAAACG______ ........................((((((((........((((.(((.....)))..))))((........))....))))))))................................ (-15.90 = -15.37 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:30:01 2011