| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,307,812 – 16,307,923 |
| Length | 111 |
| Max. P | 0.618822 |
| Location | 16,307,812 – 16,307,923 |
|---|---|
| Length | 111 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.42 |
| Shannon entropy | 0.29179 |
| G+C content | 0.48825 |
| Mean single sequence MFE | -29.13 |
| Consensus MFE | -17.35 |
| Energy contribution | -16.96 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618822 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16307812 111 + 27905053 --------UCCAGCCGGUCAUCUAUUAAGUAUAAUCAACGCCACGGCAAGCGGAAAUAGACAGAUUUCCGGCUAUUAAACGCCCAACAGAGCGGCAAAGACUCUCA-GGUCGCCUUUCAG --------....((((.((....................((....))....((((((......))))))(((........))).....)).))))...((((....-))))......... ( -26.60, z-score = -1.25, R) >droEre2.scaffold_4770 12382106 111 - 17746568 --------UCCAGCCGGUCAUCUAUUAAGUAUAAUCAACGCCACGGCAAGCGGAAAUAGACAGAUUUCCGGCUAUUAAACGCCCAACAGAGCGGCAAAGACUCUCA-GGUCGGCUUUCAG --------...(((((..(.........((.((((....((....)).(((((((((......)))))).))))))).))((((......).)))...........-)..)))))..... ( -28.80, z-score = -1.72, R) >droYak2.chr3R 5084009 111 + 28832112 --------UCCAGCCGGUCAUCUAUUAAGUAUAAUCAACGCCACGGCAAGCGGAAAUAGACAGAUUUCCGGCUAUUAAACGCCCAACAGAGCGGCAAAGACGCUCA-GGUCGGCUUUCAG --------...(((((..(.........((.((((....((....)).(((((((((......)))))).))))))).))........(((((.......))))).-)..)))))..... ( -33.20, z-score = -2.85, R) >droSec1.super_27 369376 111 - 799419 --------UCCAGCCGGUCAUCUAUUAAGUAUAAUCAACGCCACGGCAAGCGGAAAUAGACAGAUUUCCGGCUAUUAAACGCCCAACAGAGCGGCAAAGACUCUCA-GGUCGCCUUUCAG --------....((((.((....................((....))....((((((......))))))(((........))).....)).))))...((((....-))))......... ( -26.60, z-score = -1.25, R) >droSim1.chr3R 22350041 111 - 27517382 --------UCCAGCCGGUCAUCUAUUAAGUAUAAUCAACGCCACGGCAAGCGGAAAUAGACAGAUUUCCGGCUAUUAAACGCCCAACAGAGCGGCAAAGACUCUCA-GGUCGCCUUUCAG --------....((((.((....................((....))....((((((......))))))(((........))).....)).))))...((((....-))))......... ( -26.60, z-score = -1.25, R) >dp4.chr2 15470118 112 + 30794189 --------UACAGUCGGUCAUCUAUUAAGUAUAAUCAACGCCACGGCAAGCGGAAAUAGACAGAUUUCCGGCUAUUAAACGCCCAACAGAGCGGCAAAGACGCUCACGGCCGACUAUCAG --------...((((((((.........((.((((....((....)).(((((((((......)))))).))))))).))........(((((.......)))))..))))))))..... ( -35.00, z-score = -4.14, R) >droPer1.super_0 6880096 112 - 11822988 --------UACAGUCGGUCAUCUAUUAAGUAUAAUCAGCGCCACGGCAAGCGGAAAUAGACAGAUUUCCGGCUAUUAAACGCCCAACAGAGCGGCAAAGACGCUCACGGCCGGCUCUCAG --------...((((((((.........((.((((.(((((....))...(((((((......)))))))))))))).))........(((((.......)))))..))))))))..... ( -38.00, z-score = -3.89, R) >droAna3.scaffold_12911 2620651 120 - 5364042 CUCCUCCAGCCAGCCGGUCAUCUAUUAAGUAUAAUCAACGCCACGGCAAGCGGAAAUAGACAGAUUUCCGGCUAUUAAACGCCCAACAGAGCGGCAAAGACUCUCACGGUCGGCUUUCAG .......((((.((((.((....................((....))....((((((......))))))(((........))).....)).))))...((((.....))))))))..... ( -32.60, z-score = -2.00, R) >droWil1.scaffold_181108 2107135 98 - 4707319 --------UUCUGUUGGUCAUCUAUUAAGUAUAAUCAACGCCAUGGCAAACGGAAAUAGACAGAUUUCCGGCUAUUAAACACCCAACAGAGCGACCAAGACCCUUA-------------- --------(((((((((......................((....))...(((((((......)))))))............)))))))))...............-------------- ( -22.70, z-score = -2.41, R) >droVir3.scaffold_13047 8711715 112 - 19223366 --------UUCAGUCGGUCAUCUAUUAACUAUAAUCAACGCCAAGGCAAGCGGAAAUAGACAGAUUUCCGGCUAUUAAACAUUCAGCUGCGCGGCAAAAGCCGCCAGAACAGGAUCUCAG --------...((((((..((((.....((((......(((........)))...))))..))))..)))))).......((((..(((.(((((....))))))))....))))..... ( -28.60, z-score = -2.14, R) >droMoj3.scaffold_6540 5503409 112 - 34148556 --------UUCAGUCGGUCAUCUAUUAACUAUAAUCAACGCCAAGGCAAGCGGAAAUAGACAGAUUUCCGGCUAUUAAACACUCAGCAGCGCGGCAAAAGCCGCCAGGACGGGAUCUCAG --------...((((((..((((.....((((......(((........)))...))))..))))..))))))........(((..(...(((((....)))))...)..)))....... ( -26.80, z-score = -1.14, R) >droGri2.scaffold_14624 3997102 112 - 4233967 --------UUCUGUCGGUCAUCUAUUAACUAUAAUCAACGCCAAGGCAGGCGGAAAUAGACAGAUUUCCGGCUAUUAAACACUCAGCAGCGCGGCAAAAGCCUUCAGGACGCAGUUUCAC --------....((((((.....((((....))))....)))(((((((.(((((((......))))))).))............((......))....)))))...))).......... ( -24.00, z-score = -0.42, R) >consensus ________UCCAGCCGGUCAUCUAUUAAGUAUAAUCAACGCCACGGCAAGCGGAAAUAGACAGAUUUCCGGCUAUUAAACGCCCAACAGAGCGGCAAAGACUCUCA_GGUCGGCUUUCAG ............((((.......................((....)).(((((((((......)))))).)))..................))))......................... (-17.35 = -16.96 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:57 2011