| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,301,023 – 16,301,116 |
| Length | 93 |
| Max. P | 0.697257 |
| Location | 16,301,023 – 16,301,116 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 89.22 |
| Shannon entropy | 0.15058 |
| G+C content | 0.26576 |
| Mean single sequence MFE | -17.24 |
| Consensus MFE | -15.00 |
| Energy contribution | -15.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.697257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16301023 93 - 27905053 -------UGUU-UGU-AUAUUCAUCUUUUCUUUAUCAGGUUUACUUGCAAUUUUAGCUGUAUAAAAGCAUAGCAAAUAAACUUGAUUUACUUACAACUAAGA -------(((.-.((-(................((((((((((.((((.((....(((.......))))).)))).)))))))))).)))..)))....... ( -16.93, z-score = -1.64, R) >droSim1.chr3R 22341543 102 + 27517382 UCUUUUUUGUUAUAUCAUAUUCAACUUUCCUGUAUCAGGUUUACUUGCAAUUUUAGCUGCAUAAAAGCAUAGCAAAUAAACUUGAUUUACUUACAACUAAGA ((((..((((.............((......))((((((((((.((((.((....(((.......))))).)))).))))))))))......))))..)))) ( -18.00, z-score = -1.78, R) >droSec1.super_27 362598 102 + 799419 UCGUUUUUGUUAUAUCAUAUUUAUCUUUCCUGUAUCAGGUUUACUUGCAAUUUUAGCUGUAUAAAAGCAUAGCAAAUAAACUUGAUUUACAUACAACUAAGA .......................((((...(((((((((((((.((((.((....(((.......))))).)))).)))))))))......))))...)))) ( -16.80, z-score = -1.27, R) >consensus UC_UUUUUGUUAUAUCAUAUUCAUCUUUCCUGUAUCAGGUUUACUUGCAAUUUUAGCUGUAUAAAAGCAUAGCAAAUAAACUUGAUUUACUUACAACUAAGA .................................((((((((((.((((.((....(((.......))))).)))).))))))))))................ (-15.00 = -15.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:56 2011