| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,281,526 – 16,281,581 |
| Length | 55 |
| Max. P | 0.815671 |
| Location | 16,281,526 – 16,281,581 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 93.64 |
| Shannon entropy | 0.10325 |
| G+C content | 0.54091 |
| Mean single sequence MFE | -17.40 |
| Consensus MFE | -15.34 |
| Energy contribution | -15.40 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.575693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16281526 55 + 27905053 GGCCAACAAGGACAACCAGUGCCACGACAAUGGUAAGAAAUGGAGUUGGCUGGCU (((((((..((....))..(((((......))))).........))))))).... ( -16.30, z-score = -1.34, R) >droSim1.chr3R 22301541 55 - 27517382 GGCCAACAAGGACAACCAGUGCCACGACAAUGGUAAGAAAUGGAGUUGGCUGGCU (((((((..((....))..(((((......))))).........))))))).... ( -16.30, z-score = -1.34, R) >droSec1.super_27 342629 55 - 799419 GGCCAACAAGGACAACCAGUGCCACGACAAUGGUAAGAAAUGGAGUUGGCUGGCU (((((((..((....))..(((((......))))).........))))))).... ( -16.30, z-score = -1.34, R) >droEre2.scaffold_4770 12355172 55 - 17746568 GGCCAACAAGGACAACCACUGCCACGACAAUGGGGAGCAGUGGAGUUGGCUGCUU (((((((........(((((((..(........)..))))))).))))))).... ( -20.70, z-score = -1.99, R) >consensus GGCCAACAAGGACAACCAGUGCCACGACAAUGGUAAGAAAUGGAGUUGGCUGGCU (((((((..((....))..(((((......))))).........))))))).... (-15.34 = -15.40 + 0.06)
| Location | 16,281,526 – 16,281,581 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 93.64 |
| Shannon entropy | 0.10325 |
| G+C content | 0.54091 |
| Mean single sequence MFE | -16.97 |
| Consensus MFE | -14.60 |
| Energy contribution | -14.86 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16281526 55 - 27905053 AGCCAGCCAACUCCAUUUCUUACCAUUGUCGUGGCACUGGUUGUCCUUGUUGGCC .....((((((..........((((.(((....))).)))).......)))))). ( -15.63, z-score = -1.71, R) >droSim1.chr3R 22301541 55 + 27517382 AGCCAGCCAACUCCAUUUCUUACCAUUGUCGUGGCACUGGUUGUCCUUGUUGGCC .....((((((..........((((.(((....))).)))).......)))))). ( -15.63, z-score = -1.71, R) >droSec1.super_27 342629 55 + 799419 AGCCAGCCAACUCCAUUUCUUACCAUUGUCGUGGCACUGGUUGUCCUUGUUGGCC .....((((((..........((((.(((....))).)))).......)))))). ( -15.63, z-score = -1.71, R) >droEre2.scaffold_4770 12355172 55 + 17746568 AAGCAGCCAACUCCACUGCUCCCCAUUGUCGUGGCAGUGGUUGUCCUUGUUGGCC .....((((((.(((((((..(........)..)))))))........)))))). ( -21.00, z-score = -2.76, R) >consensus AGCCAGCCAACUCCAUUUCUUACCAUUGUCGUGGCACUGGUUGUCCUUGUUGGCC .....((((((..........((((.(((....))).)))).......)))))). (-14.60 = -14.86 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:52 2011