| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,279,575 – 16,279,740 |
| Length | 165 |
| Max. P | 0.859879 |
| Location | 16,279,575 – 16,279,671 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 67.57 |
| Shannon entropy | 0.55648 |
| G+C content | 0.40351 |
| Mean single sequence MFE | -25.94 |
| Consensus MFE | -12.84 |
| Energy contribution | -13.86 |
| Covariance contribution | 1.02 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.859879 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16279575 96 + 27905053 UAUGACUGAAACAGCAUACAAAAGCAAUUUAUCAAGUCCUAAUUGUGUGUGUGUGUGU----GUUAGGAUGGGUGCAGAUGGGUGUAGUUGGUUGUAGGC ((..((..((((((((((((...((((((...........))))))...))))))).)----)))........((((......)))).)..))..))... ( -20.90, z-score = -0.01, R) >droYak2.chr3R 5052507 98 + 28832112 UAUGACUGAAACAGCAUACAAAAGCAAUUUAUCAAGUCAUAAUUGUGUGUGUGUUUGGCUGGGUGUAGAUGGGUGUGUGUGGGUGCAGAUGCACCCAU-- ....(((.(..(((((((((...((((((...........)))))).)))))).)))..).)))....((((((((((.((....)).))))))))))-- ( -31.20, z-score = -1.72, R) >droEre2.scaffold_4770 12353137 94 - 17746568 UAUGACUGAAACAGCAUACAAAAGCAAUUUAUCAAGUCCUAAUUGUGUGUGUGUGUGU----GUUUGGAUGGGUGCAGAUGGGUGUAGGUGCACCCAU-- .....(..((...(((((((...((((((...........))))))...)))))))..----.))..)(((((((((..((....))..)))))))))-- ( -31.00, z-score = -2.32, R) >droMoj3.scaffold_6540 5471766 74 - 34148556 UAUGACUGAAAACGCAUACAAUAGCAAUUUAUCAUGACUUAAUUGUGUGUGUGCGUAUC--GGUCUGCAUGUGUGU------------------------ ...((((((..(((((((((...((((((...........)))))).))))))))).))--))))...........------------------------ ( -24.40, z-score = -2.80, R) >droGri2.scaffold_14624 3959080 76 - 4233967 UAUGACUGCAAACACACACAAUACCAAUUUAUCAUGACUUAAUUGUGUGUGUGUGCAUGC-AGUGUGUUAGUGUGUU----------------------- ....((((((..((((((((....(((((...........)))))..))))))))..)))-))).............----------------------- ( -22.20, z-score = -0.61, R) >consensus UAUGACUGAAACAGCAUACAAAAGCAAUUUAUCAAGUCCUAAUUGUGUGUGUGUGUGU____GUGUGGAUGGGUGUA__UGGGUG_AG_UG_____A___ ............((((((((...((((((...........)))))).))))))))........................(((((((....)))))))... (-12.84 = -13.86 + 1.02)
| Location | 16,279,636 – 16,279,740 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 80.54 |
| Shannon entropy | 0.26962 |
| G+C content | 0.49501 |
| Mean single sequence MFE | -37.90 |
| Consensus MFE | -28.82 |
| Energy contribution | -28.50 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.788873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16279636 104 + 27905053 ---------AGGAUGGGUGCAGAUGGGUGUAGUUGGUUGUAGGCGGAUACACAGACGUGUGUACUUGUCAUUGGUGUGUCGGGUGAACUUAGCUUUAGUUUGUUGUACGCUCA ---------..((..((((((.(((.(((((.((.((.....)).)))))))...))).))))))..))....(.((((..((..((((.......))))..))..)))).). ( -32.90, z-score = -1.96, R) >droYak2.chr3R 5052563 111 + 28832112 GGCUGGGUGUAGAUGGGUGUGUGUGGGUGCAGAUGCACCCA--UGGGCACACAGACGUGUGUACUUGUCAUUGGUGUGUCAGGUGAACUUAGCUUUAGUUUGUUGAACGCUCA ....((((((......((((.(((((((((....)))))))--)).))))((((((..((.((((((.(((....))).))))))......))....))))))...)))))). ( -43.00, z-score = -2.01, R) >droEre2.scaffold_4770 12353192 108 - 17746568 ---UGUGUUUGGAUGGGUGCAGAUGGGUGUAGGUGCACCCA--UGGGCAUACAGACGUGUGUACUUGUCAUUGGUGUGUCAGGUGAACUUAGCUGUAGUUUGUUGUACGCUCA ---........((.(.((((((((((((((....)))))))--)((((.(((((....((.((((((.(((....))).)))))).))....))))))))).)))))).))). ( -37.80, z-score = -1.31, R) >consensus ___UG_GU_UGGAUGGGUGCAGAUGGGUGUAGAUGCACCCA__UGGGCACACAGACGUGUGUACUUGUCAUUGGUGUGUCAGGUGAACUUAGCUUUAGUUUGUUGUACGCUCA ...........((..(((.....(((((((....))))))).....((((((....)))))))))..))....(.((((..((..((((.......))))..))..)))).). (-28.82 = -28.50 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:51 2011