| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,264,183 – 16,264,275 |
| Length | 92 |
| Max. P | 0.724482 |
| Location | 16,264,183 – 16,264,275 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 74.71 |
| Shannon entropy | 0.53208 |
| G+C content | 0.43675 |
| Mean single sequence MFE | -24.82 |
| Consensus MFE | -10.15 |
| Energy contribution | -10.33 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724482 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16264183 92 - 27905053 --AUAGACCCACUGAGCAAAUUGUAAAUGAAAAAG--UUUUUAUGUUAUUCAGUGUUUGCAGAGGGCGGAACCGCCGU-----CUAGCCCUCUCUUUCUUC---------- --.......(((((((.((.....((((......)--))).....)).)))))))...(((((.((((....)))).)-----)).)).............---------- ( -22.50, z-score = -1.48, R) >droSec1.super_27 325218 91 + 799419 --AUAGACCCACUGAGCAAAUUGUAAAUGAAAAAG--UUUUUAUGUUAUUCAGUGUUUGCAGAGGGCGGAACCGCCGU-----CUAGCCCUCUCUUUCUG----------- --.((((..(((((((.((.....((((......)--))).....)).)))))))...(((((.((((....)))).)-----)).))........))))----------- ( -23.40, z-score = -1.83, R) >droYak2.chr3R 5036638 91 - 28832112 --AUAGACCCACUGAGCAAAUUGUAAAUGAAAAAG--UUUUUAUGUUAUUCAGUGUUUGCAGAGGGCGGAACCGCCGU-----CUAGCCCUCUCUUUCUC----------- --.......(((((((.((.....((((......)--))).....)).)))))))...(((((.((((....)))).)-----)).))............----------- ( -22.50, z-score = -1.52, R) >droEre2.scaffold_4770 12337347 92 + 17746568 --AUAGACCCACUGAGCAAAUUGUAAAUGAAAAAG--UUUUUAUGUUAUUCAGUGUUUGCAGAGGGCGGAACCGCCGU-----CUAGCCCUCUCUUUCUGC---------- --.((((..(((((((.((.....((((......)--))).....)).)))))))...(((((.((((....)))).)-----)).))........)))).---------- ( -23.90, z-score = -1.62, R) >droAna3.scaffold_12911 2579219 98 + 5364042 --AUAGACCCACUGAGCAAAUUGUAAAUGAAAAAG--UUUUGAUGUUAUUCAGUGUUUGCAGGGGGCGGAACUGCUGU-----CUAGCUUCCUCUCCCGUCGUCUGU---- --((((((.(((((((.((.....((((......)--))).....)).)))))))......(((((.((((..(((..-----..))))))).)))))...))))))---- ( -28.70, z-score = -1.90, R) >dp4.chr2 15429690 106 - 30794189 --AUAGACCCACUGAGCAAAUUGUAAAUGAAAAAG--UUUUUAUGUUAUUCAGUGUUUGCAGUGGGCGGAUCCGCCGCUGCUGCGACCCCUCGCCCCUGUCUCUUUCUCU- --..((((.(((((((.((.....((((......)--))).....)).)))))))...(((((((.((....))))))))).((((....))))....))))........- ( -29.30, z-score = -2.26, R) >droPer1.super_0 6839325 106 + 11822988 --AUAGUCCCACUGAGCAAAUUGUAAAUGAAAAAG--UUUUUAUGUUAUUCAGUGUUUGCAGUGGGCGGAUCCGCCGCUGCUGCGACCCCUCGCCCCUGUCUCUUUCUCU- --.......(((((((.((.....((((......)--))).....)).)))))))...(((((((.((....))))))))).((((....))))................- ( -27.00, z-score = -1.68, R) >droWil1.scaffold_181108 2063808 90 + 4707319 CCAUAGACCCACUGAGCAAAUUGUAAAUGAAAAAG--UUUUUAUGUUAUUCAGUGUUUGCUGUGGGCGGGUCUGUGUUUCCGUUUACUUUUC------------------- .(((((((((.((((((((((.((((((((((...--.)))))).)))).....))))))).)))..)))))))))................------------------- ( -24.80, z-score = -2.70, R) >droVir3.scaffold_13047 8657395 106 + 19223366 --AUAGACCCAGUGAGCAAAUUGUAAAUGAAAAAG-UUUUUUAUGUUAUUCAGUGUUUGCUGUGGGCGGCUCUUCCAUCAUUGCGGCCC--CACGCGCCCUCUCUAUCUCU --(((((..(((..((((....((((((((((...-..)))))).))))....))))..))).((((((.....))......(((....--..)))))))..))))).... ( -28.20, z-score = -1.76, R) >droMoj3.scaffold_6540 5455422 103 + 34148556 --AUAGACCCAGUGAGCAAAUUGUAAAUGAAAAAGUUUUUUUAUGUUAUUCAGCGUUUGCUGUGGGCGACUCUUCCAUCAUGGC-ACCCGCUACCCCCUCUCUCUG----- --.......(((.(((..........(((((((....))))))).......((((..((((((((..((....))..)))))))-)..)))).......))).)))----- ( -21.60, z-score = -0.83, R) >droGri2.scaffold_14624 3936561 108 + 4233967 --AUAGACCCAGUGAGCAAAUUGUAAAUGAAAAAG-UUUUUUAUGUUAUUCAGUGUUUGCUGUUGGCGUCUCUUCCAUCAUUUCCGCCCAUCAUUUGCUCUCUCACUCUCU --..(((...((((((......((((((((.....-..............((((....))))..((((................))))..))))))))...)))))).))) ( -21.09, z-score = -2.05, R) >consensus __AUAGACCCACUGAGCAAAUUGUAAAUGAAAAAG__UUUUUAUGUUAUUCAGUGUUUGCAGUGGGCGGAUCCGCCGU_____CUACCCCUCUCUCCCUCC__________ .....(.(((.....((((((.(((((((((((....))))))).)))).....))))))...))))............................................ (-10.15 = -10.33 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:47 2011