| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,249,171 – 16,249,264 |
| Length | 93 |
| Max. P | 0.903599 |
| Location | 16,249,171 – 16,249,264 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 69.12 |
| Shannon entropy | 0.61379 |
| G+C content | 0.39220 |
| Mean single sequence MFE | -19.32 |
| Consensus MFE | -8.01 |
| Energy contribution | -8.01 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903599 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16249171 93 - 27905053 -CAAAGUUAAAAAGUGGAAAACUUUUUCUUUUCUAUUUAACGUAAUUUUCCCUUAUUUG-CUGUGUCUUAUACUGGGGGAAAUCCACAUCCCCAC------------------------- -....((((((.((.(((((....)))))...)).))))))((...(((((((((....-..((((...)))))))))))))...))........------------------------- ( -16.90, z-score = -0.85, R) >droSim1.chr3R 22307121 93 + 27517382 -CAAAGUUAAAAAGUGGAAAAGUUUUUCUUUUCUAUUUAACGUAAUUUUCCCUUAUUUG-CUGUGUCUGAUACGGGGGGAAAUCCCCAUCCCCCC------------------------- -.(((((((..(((((((((((.....)))))))))))....)))))))..........-..((((...))))(((((((........)))))))------------------------- ( -25.70, z-score = -2.72, R) >droSec1.super_27 310296 92 + 799419 -CAAAGUUAAAAAGUGGAAAACUUUUUCUUUUCUAUUUAACGUAAUUUUCCCUUAUUUG-CUGUGUCUGAUAC-GGGGGAAAUCCCCAUCCCCAC------------------------- -....((((((.((.(((((....)))))...)).))))))(..(((((((((((((..-........)))).-)))))))))..).........------------------------- ( -17.40, z-score = -0.59, R) >droYak2.chr3R_random 2740763 87 - 3277457 -CGAAGUUAAAAAGUGGAAAACUUUUUCUUUUCUAUUUAACGUAAUUUUCCCUUAUUUG-CUGUGUCUGAUAC--GGGGAAAUCCCCCCAC----------------------------- -.((((..(((((((.....)))))))..))))........(..((((((((.((((..-........)))).--))))))))..).....----------------------------- ( -17.60, z-score = -1.22, R) >droEre2.scaffold_4770 12322479 89 + 17746568 -CAAAGUUAAAAAGUGGAAAAGUUUUUCUUUUCUAUUUAACGUAAUUUUCCCUUAUUUG-CUGUGUCUGAUCCGGGGGGCAAUCCCCGCAC----------------------------- -.(((((((..(((((((((((.....)))))))))))....)))))))..........-............((((((....))))))...----------------------------- ( -21.50, z-score = -1.60, R) >droAna3.scaffold_12911 2560104 95 + 5364042 CAAAAGUUAAAAAGUGGAAAAGUUUUUCUUUUCUAUUUAACGUAAUUUUCCCUUAUUUG-C--UGUGUCUUUCGGGCCCCAGCCCUCCAGC---UCCCAGC------------------- ..(((((((..(((((((((((.....)))))))))))....))))))).........(-(--((.(.((...((((....))))...)).---.).))))------------------- ( -22.30, z-score = -2.86, R) >dp4.chr2 15415525 96 - 30794189 -CAAAGUUAAAAAGUGGAAAAGUUUUUCUUUUCUAUUUAACGUAAUUUCCCCUUAUUUG-CUUUGUCUGCUCUCGUGAUCUCUUCGUUCUCCUCCUCC---------------------- -((((((....(((((((((((.....)))))))))))...((((.......))))..)-))))).................................---------------------- ( -11.80, z-score = -1.54, R) >droPer1.super_0 6825100 96 + 11822988 -CAAAGUUAAAAAGUGGAAAAGUUUUUCUUUUCUAUUUAACGUAAUUUCCCCUUAUUUG-CUUUGUCUGCUCUCGUGAUCUCUUCGUUCUCGUCCUCC---------------------- -((((((....(((((((((((.....)))))))))))...((((.......))))..)-)))))........((.((.(.....).)).))......---------------------- ( -12.40, z-score = -1.62, R) >droWil1.scaffold_181108 2048499 89 + 4707319 -CAAAGUUAAAAAGUGGAAAAG-UUUUCUUUUCUAUUUAACGUAAUUUUCCUUCAUUUGCCAGCACUGGCAACAGAACGUCCCGCCCCUGC----------------------------- -.(((((((..(((((((((((-....)))))))))))....)))))))..(((..((((((....))))))..)))..............----------------------------- ( -20.20, z-score = -2.38, R) >droVir3.scaffold_13047 8641002 117 + 19223366 -CAAAGUUAAAAAGUGGAAAAG-UUUUCUUUUCUAUUUAACGUAAUUUGCCUUCAUUUG-CGUUAGCUCUGCCGCCCCCACCAGCUCCUGCCAAAUAUGGACUCACUUGCUGGCCAGCGU -((.(((((..(((((((((((-....))))))))))).((((((...........)))-)))))))).)).(((.....(((((.....(((....)))........)))))...))). ( -28.12, z-score = -1.48, R) >droMoj3.scaffold_6540 5441518 100 + 34148556 -CAAAGUUAAAAAGUGGAAAAG-UUUUCUUUUCUAUUUAACGUAAUUUGCCUUCAUUUG-CGUUAGCUCCUUCUGGCGCCCGCUCCCUCGCGCUGCUCAGCCA----------------- -...(((((..(((((((((((-....))))))))))).((((((...........)))-))))))))......(((((.(((......)))..))...))).----------------- ( -23.50, z-score = -1.62, R) >droGri2.scaffold_14624 3917419 101 + 4233967 -CAAAGUUAAAAAGUGGAAAAG-UUUUCUUUUCUAUUUAACGUAAUUUGCCUUCAUUUG-CGUUA-------CGCACCCCCAAACCCUCCCC-----UGUUCCCAUUCUUCAGUCG---- -..........(((((((((((-....)))))))))))(((((((...........)))-)))).-------....................-----...................---- ( -14.40, z-score = -2.28, R) >consensus _CAAAGUUAAAAAGUGGAAAAGUUUUUCUUUUCUAUUUAACGUAAUUUUCCCUUAUUUG_CUGUGUCUGAUACGGGGGGCAAUCCCCCCCCC__C_________________________ ...((((((..((((((((((.......))))))))))....))))))........................................................................ ( -8.01 = -8.01 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:47 2011