| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,249,028 – 16,249,119 |
| Length | 91 |
| Max. P | 0.719892 |
| Location | 16,249,028 – 16,249,119 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 93.99 |
| Shannon entropy | 0.11671 |
| G+C content | 0.52859 |
| Mean single sequence MFE | -29.45 |
| Consensus MFE | -27.42 |
| Energy contribution | -27.38 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.719892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16249028 91 - 27905053 GUCGAGCAUAUGUUGCCCUUGCCUCAUAAUGUGGCAUAUUUGGCAGCUCGACAGCUUUGAGAGCCGCGAUUGAGUCUCGUGCCAUGUGCUG ....((((((((.((((..((((.(.....).)))).....))))((((((..((..(....)..))..)))))).......)))))))). ( -29.10, z-score = -0.70, R) >droSim1.chr3R 22306982 91 + 27517382 GUCGAGCAUAUGUUGCCCUUGCCUCAUAAUGUGGCAUAUUUGGCAGCUCGACAGCUUUGAGAGCCGCGAUUGAGUCCCGUGCCAUGUGCUG ....((((((((.((((..((((.(.....).)))).....))))((((((..((..(....)..))..)))))).......)))))))). ( -29.10, z-score = -1.03, R) >droSec1.super_27 310157 91 + 799419 GUCGAGCAUAUGUUGCCCUUGCCUCAUAAUGUGGCAUAUUUGGCAGCUCGACAGCUUUGAGAGCCGCGAUUGAGUCCCGUGCCAUGUGCUG ....((((((((.((((..((((.(.....).)))).....))))((((((..((..(....)..))..)))))).......)))))))). ( -29.10, z-score = -1.03, R) >droYak2.chr3R_random 2740624 91 - 3277457 GUCGAGCAUAUGUUGCCCUUGCCUCAUAAUGUGGCAUAUUCGGCAGCUCGACAGCUUUGAGAGCCGCGAUUGAGUCCCGUGCCAUAUGCUG ....((((((((..((....(.((((...((((((...(((((.((((....))))))))).))))))..)))).)..))..)))))))). ( -29.20, z-score = -1.16, R) >droEre2.scaffold_4770 12322340 91 + 17746568 GUUGAGCAUAUGUUGCCCUUGCCUCAUAAUGUGGCAUAUUUGGCAGCUCGACAGCUUUGAGAACCGCGAUUGAGUCCCGUGCCAUGUGCUG ....((((((((.((((..((((.(.....).)))).....))))((((((..((..........))..)))))).......)))))))). ( -28.10, z-score = -1.37, R) >droAna3.scaffold_12911 2559971 82 + 5364042 GUCGAGCAUAUGUUGCCCUUGCCUCAUAAUGUGGCAUAUUUGGCAGCUCGACAGCU---------ACGAUUGAGUCUCGUGGCAUGUGCUG ....(((((((((((((..((((.(.....).)))).....))))))......(((---------((((.......)))))))))))))). ( -32.10, z-score = -2.72, R) >consensus GUCGAGCAUAUGUUGCCCUUGCCUCAUAAUGUGGCAUAUUUGGCAGCUCGACAGCUUUGAGAGCCGCGAUUGAGUCCCGUGCCAUGUGCUG ....((((((((.((((..((((.(.....).)))).....))))((((((..((..(....)..))..)))))).......)))))))). (-27.42 = -27.38 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:46 2011