| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,239,473 – 16,239,572 |
| Length | 99 |
| Max. P | 0.869080 |
| Location | 16,239,473 – 16,239,572 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 93.97 |
| Shannon entropy | 0.09735 |
| G+C content | 0.55917 |
| Mean single sequence MFE | -36.42 |
| Consensus MFE | -30.76 |
| Energy contribution | -31.20 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16239473 99 + 27905053 GAUGGAAGUGGA-UGGAGGAUUCCUCCAGUGUUUCGCAUUUUCUGCUACUUCGCUGGAGAGCUGCCCUUUGCCCUCUGCCAUCUUGGUCCUCUGCCCUUG (((((.((.((.-.(((((...(((((((((....(((.....))).....)))))))).)....)))))..)).)).)))))..(((.....))).... ( -33.30, z-score = -1.75, R) >droYak2.chr3R_random 2734241 99 + 3277457 GAAGGAUGUGAG-UGGAGGAUUCCUCCAGUGUUUCGCAUUUUCUGCUACUUCGCAGGAGCGCUGCCCUUUGCCCUCUGCCUUCUUGGCCCUCUGCCUCUA ((((((((((((-((((((...))))))....)))))))...((((......))))(((.((........)).)))..)))))..(((.....))).... ( -32.30, z-score = -1.11, R) >droSec1.super_27 300576 99 - 799419 GAUGGAAGUGGG-UGGAGGAUUCCUCCAGUGUUUCGCAUUUUCUGCUACUUCGCUGGAGAGCUGCCCUUUGCCCUCUGCCAUCUUGGUCCUCUGCCCCUG (((((.((.(((-..((((...(((((((((....(((.....))).....)))))))).)....))))..))).)).)))))..(((.....))).... ( -40.30, z-score = -3.43, R) >droSim1.chr3R 22272174 100 - 27517382 GAUGGAAGUGGGGUGGAGGAUUCCUCCAGUGUUUCGCAUUUUCUGCUACUUCGCUGGAGAGCUGCCCUUUGCCCUCUGCCAUCUUGGUCCUCUGCCCCUG (((((.((.((((..((((...(((((((((....(((.....))).....)))))))).)....))))..)))))).)))))..(((.....))).... ( -39.80, z-score = -2.62, R) >consensus GAUGGAAGUGGG_UGGAGGAUUCCUCCAGUGUUUCGCAUUUUCUGCUACUUCGCUGGAGAGCUGCCCUUUGCCCUCUGCCAUCUUGGUCCUCUGCCCCUG (((((.((.(((.(..(((...(((((((((....(((.....))).....)))))))).)....)))..)))).)).)))))..(((.....))).... (-30.76 = -31.20 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:44 2011