Locus 10751

Sequence ID	dm3.chr3R
Location	16,234,753 – 16,234,870
Length	117
Max. P	0.842464

overview

Window 0

Location	16,234,753 – 16,234,870
Length	117
Sequences	15
Columns	120
Reading direction	forward
Mean pairwise identity	75.74
Shannon entropy	0.54289
G+C content	0.51491
Mean single sequence MFE	-35.45
Consensus MFE	-18.31
Energy contribution	-18.03
Covariance contribution	-0.28
Combinations/Pair	1.47
Mean z-score	-1.39
Structure conservation index	0.52
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.88
SVM RNA-class probability	0.842464
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 16234753 117 + 27905053
UUCGCCUACGUGCACUUCAAGUUCCGCCAGGAUGCAGCUGCCGCCAUUGAGGUUCUUAAUGGCCACGGCUACGACCACUUGAUCCUCUGCGUCGAGUGGUCCAAGCCUCAG---CCGUAA
......((((((((........(((....)))))))((((..(((((((((...)))))))))...((((..(((((((((((.......)))))))))))..)))).)))---))))). ( -44.90, z-score =  -3.08, R)
>anoGam1.chr2L 476691 120 - 48795086
UUCGCAUACGUUCACUUCCGUUCCCGCCGCGAUGCUGCAACUGCGAUCGAAGUUCUCAACGGCUACGGUUACGAUCAUUUGAUUCUGAGCGUCGAAUGGUCCAAGCCGCAGAACCCGCAG
...((....((((....(((((...((..((((((.......)).))))..))....)))))...(((((..(((((((((((.......)))))))))))..)))))..))))..)).. ( -32.90, z-score =   0.08, R)
>droSim1.chr3R 22267403 117 - 27517382
UUCGCCUACGUGCACUUCAAGUUUCGCCAGGAUGCAGCUGCCGCCAUUGAGGUCCUUAAUGGCCACGGCUACGACCACUUGAUCCUCUGCGUCGAGUGGUCCAAGCCUCAA---CCGUAA
......((((.((............))...((.(((((((..(((((((((...)))))))))..)))))..(((((((((((.......)))))))))))...)).))..---.)))). ( -39.10, z-score =  -1.80, R)
>droSec1.super_27 295830 117 - 799419
UUUGCCUAUGUGCACUUCAAGUUCCGCCAGGAUGCAGCUGCCGCCAUUGAGGUCCUUAAUGGCCACGGCUACGACCACUUGAUCCUCUGCGUCGAGUGGUCCAAGCCUCAG---CCGUAA
..(((......)))........(((....)))(((.((((..(((((((((...)))))))))...((((..(((((((((((.......)))))))))))..)))).)))---).))). ( -44.00, z-score =  -2.87, R)
>droYak2.chr3R 5021215 117 + 28832112
UUCGCCUAUGUGCACUUCAAGUUCCGUCAGGAUGCAGCUGCUGCCAUUGAAGUCCUUAAUGGCCACGGCUACGACCACUUGAUCCUCUGCGUCGAGUGGUCCAAGCCUCAG---CCGUAA
....((((((.(.((.....)).)))).))).(((.((((..((((((((.....))))))))...((((..(((((((((((.......)))))))))))..)))).)))---).))). ( -42.20, z-score =  -2.91, R)
>droEre2.scaffold_4770 12307552 117 - 17746568
UUCGCCUAUGUGCACUUCAAGUUCCGGCAGGAUGCAGCUGCUGCCAUUGAAGUCCUUAAUGGCCACGGCUACGACCACUUGAUCCUUUGCGUCGAGUGGUCCAAGCCUCAG---CCGUAA
...((......))(((((((....((((((.......))))))...))))))).....(((((...((((..(((((((((((.......)))))))))))..))))...)---)))).. ( -44.60, z-score =  -3.06, R)
>droAna3.scaffold_12911 2544988 117 - 5364042
UUCGCCUACGUGCACUUCAAAUUCCGUCAGGACGCAGCUGCAGCCAUCGAAAUCCUCAACGGACAUGGCUACGACCACUUGAUCCUCUGUGUCGAGUGGUCGAAACCGCAG---CCAUGA
........((((..........(((....)))....(((((((((((.(...(((.....)))))))))).((((((((((((.......)))))))))))).....))))---))))). ( -42.00, z-score =  -3.06, R)
>dp4.chr2 15399845 117 + 30794189
UUCGCCUACGUGCACUUCAAGUUCCGCCAGGAUGCCGCUGCCGCCAUCGAGAUUCUCAACGGCCAUGGCUACGAUCACUUGAUCCUCUGCGUGGAGUGGUCCAAGCCACAG---CCCUAA
...((((((((.....(((((((((....))).((((..((((.....(((...)))..))))..)))).......))))))......)))))).(((((....))))).)---)..... ( -34.60, z-score =  -0.22, R)
>droPer1.super_0 6809309 117 - 11822988
UUCGCCUACGUGCACUUCAAGUUCCGCCAGGAUGCCGCUGCCGCCAUCGAGAUUCUCAACGGCCAUGGCUACGAUCACUUGAUCCUCUGCGUGGAGUGGUCCAAGCCACAG---CCCUAA
...((((((((.....(((((((((....))).((((..((((.....(((...)))..))))..)))).......))))))......)))))).(((((....))))).)---)..... ( -34.60, z-score =  -0.22, R)
>droVir3.scaffold_13047 8625600 117 - 19223366
UUCGCCUAUGUCCACUUCAAAUAUCGAAAGGACGCAGCCGAGGCAAUCGAAAUACUCAACGGACAUGGUUACGAUCACUUGAUCCUGAGCGUAGAGUGGUCCAAGCCGCAGAACUAA---
..(((((((((((..........((....)).....((....))................))))))))(((.((((....)))).))))))....(((((....)))))........--- ( -29.70, z-score =  -0.56, R)
>droMoj3.scaffold_6540 5425716 117 - 34148556
UUUGCCUAUGUGCACUUCAAAUAUCGCAAAGACGCGGCCGAGGCAAUCGAAAUACUCAACGGACACGGCUAUGAUCACUUAAUCCUAAGCGUGGAGUGGUCCAAGCCGCAGAAUUAA---
(((((....(((..(........((((......))))..(((............)))...)..)))((((..((((((((...(......)..))))))))..))))))))).....--- ( -29.20, z-score =  -0.18, R)
>droGri2.scaffold_14624 3897069 117 - 4233967
UUCGCUUAUGUGCACUUCAAAUAUCGCAAGGAUGCCGCCGAGGCCGUUGAGGUGCUCAACGGACAUGGUUACGAUCAUUUAAUACUCAGCGUUGAAUGGUCCAAGCCACAGAAUUAA---
(((.....((.(((((((((...((....))..(((.....)))..))))))))).)).......(((((..(((((((((((.......)))))))))))..)))))..)))....--- ( -35.60, z-score =  -1.69, R)
>droWil1.scaffold_181108 2031805 111 - 4707319
UUCGCCUAUGUGCACUUCAAGUUCCGUCAGGAUGCAGCUGCUGCCAUCGAGAUACUCAAUGGUCAUGGUUAUGAUCAUUUAAUACUUUGCGUGGAGUGGUCCAAGCCGCAG---------
..........((((........(((....))))))).((((.(((((.(((...))).)))))...((((..((((((((..(((.....)))))))))))..))))))))--------- ( -27.20, z-score =   0.91, R)
>triCas2.ChLG9 6411056 116 + 15222296
UUCGCUUAUAUUCAUUUCAAGUUUAAGAACGACGCUGCUAAAGCCAUUUCUAUGCUUAAUGGACACGGUUAUGAUCAUCUUAUACUCACGGUGGAUUGGUCUAAGCCACACCCUAA----
...(((((.(((((((...(((.(((((.....(((.....)))(((..(..((((....)).))..)..)))....))))).)))...))))))).....)))))..........---- ( -20.70, z-score =   0.06, R)
>apiMel3.Group12 9057742 117 + 9182753
UUUGCAUAUGUACAUUUCAAAUAUAGGAUGGAAGCUGCAAAAGCUAUUGCUACACUCAAUGGUUAUGGUUACGAUCAUCUUAUUUUGAAUGUAGAUUGGUCAAAACCACAGCAGCAA---
.((((..((.((((((.((((.(((((((((..(..((...((((((((.......))))))))...))..)..))))))))))))))))))).))((((....))))..))))...--- ( -30.50, z-score =  -2.25, R)
>consensus
UUCGCCUAUGUGCACUUCAAGUUCCGCCAGGAUGCAGCUGCCGCCAUUGAGAUCCUCAAUGGCCACGGCUACGAUCACUUGAUCCUCUGCGUCGAGUGGUCCAAGCCACAG___CCGUAA
....................................((....))......................((((..(((((((((((.......)))))))))))..))))............. (-18.31 = -18.03 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:43 2011