| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,106,185 – 8,106,359 |
| Length | 174 |
| Max. P | 0.951638 |
| Location | 8,106,185 – 8,106,300 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 74.58 |
| Shannon entropy | 0.45180 |
| G+C content | 0.41625 |
| Mean single sequence MFE | -21.76 |
| Consensus MFE | -13.83 |
| Energy contribution | -14.63 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700143 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8106185 115 + 23011544 UGCAUAGUUUUAGAGCUGCACAUUCAUCCUUAAUUGGUCCAGACUGGAUCCUCUACCUUAUUCCAACCCUUGCACAAAUUAUGUGAAUAAUUAGCAUACCCUCCUGCAAGGGUAC ((((..(((....)))))))...............(((((.....)))))...............(((((((((.....(((((.........)))))......))))))))).. ( -24.70, z-score = -1.04, R) >droEre2.scaffold_4929 17012039 102 + 26641161 ---------GUUUAGCAAAGCACAGUUCCAGA---GCUUCAGACUGGAUCCUCUACACUAUCCCUACCCUUACAGAAAUUAUGUGAAUAAUUAGCAUACUCCC-AGCAAGCGUAC ---------((((.((.......(((...(((---(..((......))..))))..)))..........(((((.......))))).................-.)))))).... ( -12.20, z-score = 1.12, R) >droYak2.chr2L 10736886 96 + 22324452 ------------------UUCAUUCAUCUUUAAUUGGUCCAGACUGGAUCCUCUACUCUAUCCCUGCCCUUGCACAAAUUAUGUGAAUAAUUAGCAUACCCUC-UGCAAGGGUAC ------------------.................(((((.....)))))..............((((((((((.....(((((.........))))).....-)))))))))). ( -23.90, z-score = -2.85, R) >droSec1.super_3 3602597 115 + 7220098 UGCAUAGUUUUGUAGCUGCACAUUCAUCUUUAAUUGGUCCAGAUUAGAUGCUCUACUCUAUCCCAACCCUUGCACAAAUUAUGUGAAUAAUUAGCAUACCCUCCUGCAAGGGUAC ((((..(((....)))))))..............(((...(((.(((.....))).)))...)))(((((((((.....(((((.........)))))......))))))))).. ( -25.30, z-score = -1.29, R) >droSim1.chr2L_random 424995 101 + 909653 UGCAUAGUUUUGUAGCUGCACAUUCAUCUUCA--------------GAUGCUCUACUCUAUCCCAACCCUUGCACAAAUUAUGUGAAUAAUUAGCAUACCCUCCUGCAAGGGUAC ...((((....((((..(((...((.......--------------))))).)))).))))....(((((((((.....(((((.........)))))......))))))))).. ( -22.70, z-score = -1.88, R) >consensus UGCAUAGUUUUGUAGCUGCACAUUCAUCUUUAAUUGGUCCAGACUGGAUCCUCUACUCUAUCCCAACCCUUGCACAAAUUAUGUGAAUAAUUAGCAUACCCUCCUGCAAGGGUAC ........................(((((................)))))...............(((((((((.....(((((.........)))))......))))))))).. (-13.83 = -14.63 + 0.80)
| Location | 8,106,300 – 8,106,359 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 97.97 |
| Shannon entropy | 0.03671 |
| G+C content | 0.50847 |
| Mean single sequence MFE | -13.12 |
| Consensus MFE | -13.06 |
| Energy contribution | -12.74 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.75 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.951638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8106300 59 - 23011544 AGAAGUGCCACCCAUCAGACCCACUCAACUGUGCACACUCGCAGAAAUGGCACCUUAUU ....((((((.......((.....))..(((((......)))))...))))))...... ( -13.50, z-score = -2.03, R) >droEre2.scaffold_4929 17012141 59 - 26641161 AGAAGUGUCGCCCAUCAGACCCACUCAUCUGUGCACACUCGCAGAAAUGGCACCUUAUU ..(((.((.(((.....((.....)).((((((......))))))...))))))))... ( -11.60, z-score = -0.62, R) >droYak2.chr2L 10736982 59 - 22324452 AGAAGUGCCACCCAUCAGACCCACUCAACUGUGCACACUCGCAGAAAUGGCACCUUAUU ....((((((.......((.....))..(((((......)))))...))))))...... ( -13.50, z-score = -2.03, R) >droSec1.super_3 3602712 59 - 7220098 AGAAGUGCCACCCAUCAGACCCACUCAACUGUGCACACUCGCAGAAAUGGCACCUUAUU ....((((((.......((.....))..(((((......)))))...))))))...... ( -13.50, z-score = -2.03, R) >droSim1.chr2L_random 425096 59 - 909653 AGAAGUGCCACCCAUCAGACCCACUCAACUGUGCACACUCGCAGAAAUGGCACCUUAUU ....((((((.......((.....))..(((((......)))))...))))))...... ( -13.50, z-score = -2.03, R) >consensus AGAAGUGCCACCCAUCAGACCCACUCAACUGUGCACACUCGCAGAAAUGGCACCUUAUU ....((((((.......((.....))..(((((......)))))...))))))...... (-13.06 = -12.74 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:05 2011