| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,193,192 – 16,193,296 |
| Length | 104 |
| Max. P | 0.520323 |
| Location | 16,193,192 – 16,193,296 |
|---|---|
| Length | 104 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 85.37 |
| Shannon entropy | 0.30902 |
| G+C content | 0.34340 |
| Mean single sequence MFE | -18.02 |
| Consensus MFE | -14.13 |
| Energy contribution | -14.04 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.520323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16193192 104 + 27905053 CCAAACGAGGCUGGCAGGGAAAACGAUUUAACUGAAAAUUGAGGUUGAACUUAAUCAUAAAUCAAUGCUAAUGAUGCUAAAAUGCUAGAAAAUUUCCCAACCAU-------- ...........(((..((((((..((((((..(((...(((((......))))))))))))))............((......)).......))))))..))).-------- ( -19.90, z-score = -1.43, R) >droSim1.chr3R 22215880 104 - 27517382 CCAAACGAGGCUGGCAGGGAAAACGAUUUAACUGAAAAUUGAGGUUGAACUUAAUCAUAAAUCAAUGCUAAUGAUGCUAAAAUGCUAGAAAAUUUCCCAACCAU-------- ...........(((..((((((..((((((..(((...(((((......))))))))))))))............((......)).......))))))..))).-------- ( -19.90, z-score = -1.43, R) >droSec1.super_27 254345 104 - 799419 CCAAACGAGGCUGGCAGGGAAAACGAUUUAACUGAAAAUUGAGGUUGAACUUAAUCAUAAAUCAAUGCUAAUGAUGCUAAAAUGCUAGAAAAUUUCCCAACCAU-------- ...........(((..((((((..((((((..(((...(((((......))))))))))))))............((......)).......))))))..))).-------- ( -19.90, z-score = -1.43, R) >droYak2.chr3R 4969136 104 + 28832112 CCAAACGAGGCUGGCAGGGAAAACGAUUUAACUGAAAAUUGAGGUUGAACUUAAUCAUAAAUCAAUGCUAAUGAUGCUAAAAUGCUAGAAAAUUUCCCAACCAU-------- ...........(((..((((((..((((((..(((...(((((......))))))))))))))............((......)).......))))))..))).-------- ( -19.90, z-score = -1.43, R) >droEre2.scaffold_4770 12264237 104 - 17746568 CCAAACGAGGCUGGCAGGGAAAACGAUUUAACUGAAAAUUGAGGUUGAACUUAAUCAUAAAUCAAUGCUAAUGAUGCUAAAAUGCUAGAAAAUUUCCCAACCAU-------- ...........(((..((((((..((((((..(((...(((((......))))))))))))))............((......)).......))))))..))).-------- ( -19.90, z-score = -1.43, R) >droAna3.scaffold_12911 2504326 94 - 5364042 ----------UGGGGAAGGAAAACGAUUUAACUGAAAAUUGAGGUUGAACUUAAUCAUAAAUCAAUGCUAAUGAUGCUAAAAUGCUAGAAAAUUUCCUACCCAG-------- ----------..(((.((((((..((((((..(((...(((((......))))))))))))))............((......)).......)))))).)))..-------- ( -21.40, z-score = -3.24, R) >dp4.chr2 15358295 106 + 30794189 ---CCAAACGAAGGCAAGGAAAACGAUUUAACUGAAAAUUGAGGUUGAACUUAAUCAUAAAUCAAUGCUAAUGAUGCUAAAAUGCUAGAAAAUUUCUUACACAGCCCAG--- ---.........(((((((((...((((((..(((...(((((......))))))))))))))............((......)).......)))))).....)))...--- ( -14.50, z-score = -0.16, R) >droPer1.super_0 6766920 106 - 11822988 ---CCAAACGAAGGCAAGGAAAACGAUUUAACUGAAAAUUGAGGUUGAACUUAAUCAUAAAUCAAUGCUAAUGAUGCUAAAAUGCUAGAAAAUUUCUUACACAGCCCAG--- ---.........(((((((((...((((((..(((...(((((......))))))))))))))............((......)).......)))))).....)))...--- ( -14.50, z-score = -0.16, R) >droWil1.scaffold_181108 1986587 111 - 4707319 -CACAAAACGAAGGCAAGGAAAACGAUUUAACUGAAAAUUGAGGUUGAACUUAAUCAUAAAUCAAUGCUAAUGAUGCUAAAAUGCUAGAAAAUUUUGCAGGCAUGCUGCCGU -...........((((........((((((..(((...(((((......)))))))))))))).(((((.....(((.(((((........)))))))))))))..)))).. ( -21.50, z-score = -0.98, R) >droVir3.scaffold_13047 8571808 93 - 19223366 ------AGAGCCGGCAUGGAAAACGAUUUAACUGAAAAUUGAGGUUGAACUUAAUCAUAAAUCAAUGCUAAUGAUGCCAAAAUGCUAGAAAAUUUCCCA------------- ------..(((.((((((.....)((((((..(((...(((((......))))))))))))))..........))))).....))).............------------- ( -13.90, z-score = -0.00, R) >droMoj3.scaffold_6540 5385272 85 - 34148556 --------------CAUGGAAAACGAUUUAACUGAAAAUUGAGGUUGAACUUAAUCAUAAAUCAAUGCUAAUGAUGCUAAAAUGCUAGAAAAUUUCCCA------------- --------------...(((((..((((((..(((...(((((......))))))))))))))............((......)).......)))))..------------- ( -12.90, z-score = -1.36, R) >consensus _CAAACGAGGCUGGCAGGGAAAACGAUUUAACUGAAAAUUGAGGUUGAACUUAAUCAUAAAUCAAUGCUAAUGAUGCUAAAAUGCUAGAAAAUUUCCCAACCAU________ ................((((((..((((((..(((...(((((......))))))))))))))............((......)).......)))))).............. (-14.13 = -14.04 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:41 2011