| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,192,989 – 16,193,085 |
| Length | 96 |
| Max. P | 0.752553 |
| Location | 16,192,989 – 16,193,085 |
|---|---|
| Length | 96 |
| Sequences | 11 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 75.66 |
| Shannon entropy | 0.51433 |
| G+C content | 0.48174 |
| Mean single sequence MFE | -21.98 |
| Consensus MFE | -13.65 |
| Energy contribution | -13.74 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.752553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16192989 96 + 27905053 UCAGUGCGUCCGAUUGUGAGAAUCGCAGCUACAUCUGAUUUUCUGAUUUCUUGUUUUCGACGUUUUGCCAGCCUCCUUAGUGGAGUUCCAUACCCC------------- .(((.(((((.((..(..((((...(((..............)))..))))..)..))))))).))).....((((.....))))...........------------- ( -20.84, z-score = -0.90, R) >droSim1.chr3R 22215676 96 - 27517382 UCAGUGCGUCCGAUUGUGAGAAUCGCAGCUACUUCUGAUUUUCUGAUUUCUUGUUUUCGACGUUUUGCCAGCCUCCUUAGUGGAGUUCCCUACCCC------------- .(((.(((((.((..(..((((...(((..............)))..))))..)..))))))).))).....((((.....))))...........------------- ( -20.84, z-score = -1.06, R) >droSec1.super_27 254142 96 - 799419 UCAGUGCGUCCGAUUGUGAGAAUCGCAGCUACUUCUGAUUUUCUGAUUUCUUGUUUUCGACGUUUUGCCAGCCUCCUUAGUGGAGUUCCCUACCCC------------- .(((.(((((.((..(..((((...(((..............)))..))))..)..))))))).))).....((((.....))))...........------------- ( -20.84, z-score = -1.06, R) >droEre2.scaffold_4770 12264030 96 - 17746568 UCAGUGCGUCCGAUUGUGAGAAUCGCAGCUACUUCUGAUUUUCUGAUUUCUUGUUUUCGACGUUUUUCCAGCCUCCUUAGUGGAGUUCCCUGCCCC------------- .(((.(((((.((..(..((((...(((..............)))..))))..)..))))))).........((((.....))))....)))....------------- ( -20.14, z-score = -0.80, R) >droAna3.scaffold_12911 2504127 96 - 5364042 UCAGUGCGUCCGAUUGUGAGAAUCGCAGCUACUUCUGAUUUUCUGAUUUCUUGUUUUCGACGUUUAGCCAGCCUCCUCGCUGGAAAUUCGCAUCCU------------- ...(((((((.((..(..((((...(((..............)))..))))..)..)))))......(((((......)))))......))))...------------- ( -23.24, z-score = -0.70, R) >dp4.chr2 15358109 109 + 30794189 UCAGUGCGUCCGAUUGUGAGAAUCGCAGCUACUUCUGAUUUUCUGAUUUCUUGUUUUCGACGUUUUCCCCCAGUCUCCAGCUCCAGCACAAGCUGGAGUCCCCCAGCAU ...(((((((.((..(..((((...(((..............)))..))))..)..)))))...........(.((((((((........)))))))).).....)))) ( -29.14, z-score = -2.25, R) >droPer1.super_0 6766734 109 - 11822988 UCAGUGCGUCCGAUUGUGAGAAUCGCAGCUACUUCUGAUUUUCUGAUUUCUUGUUUUCGACGUUUUCCCCCAGUCUCCAGCUCCAGCACAAGCUGGAGUCCCCCAGCAU ...(((((((.((..(..((((...(((..............)))..))))..)..)))))...........(.((((((((........)))))))).).....)))) ( -29.14, z-score = -2.25, R) >droWil1.scaffold_181108 1986395 95 - 4707319 UCAGUGAGUCCGAUUGUGAGAAUCGCAGCUACUUCUGAUUC-CUGAUUUCUUGUUUUCGACGUUUGCCCAGCCUCUGGGCUGCAGUUUUAUACAUA------------- ((((.(((((.(((((((.....))))).....)).)))))-)))).....(((....(((....((((((...))))))....)))....)))..------------- ( -26.20, z-score = -1.78, R) >droVir3.scaffold_13047 8571589 79 - 19223366 UCAGUGCGUCCGAUUGUGAGAAUCGCAGCUAU-CCUGAUUU-CUGAUUUCUUGUUUUCGACGUUUGCGCCUCCCACACAGC---------------------------- ...(((((((.((..(..((((...(((..((-....))..-)))..))))..)..)))))))..))..............---------------------------- ( -16.80, z-score = -0.21, R) >droMoj3.scaffold_6540 5385036 98 - 34148556 UCAGUGCGUCCGAUUGUGAGAAUCGCAGCUA-UUCUGAUUU-CUGAUUUCUUGUUUUCGACGUUUGCGCC-GCCCCCUAGCACCACCAAGUACCACGGAGC-------- .....(((((.((..(..((((...(((..(-(....))..-)))..))))..)..)))))))..((.((-((......))((......)).....)).))-------- ( -18.80, z-score = 0.80, R) >droGri2.scaffold_14624 3842065 87 - 4233967 UCAGUGCGUCCGAUUGUGAGAAUCGCAGUUAC-UCUGAUUUUCUGAUUUCUUGUUUUCGACGUUUUUUGCGCCCCCUU----CAAAUCCACC----------------- .(((.(((((.((..(..((((...(((....-.........)))..))))..)..)))))))...))).........----..........----------------- ( -15.82, z-score = -0.88, R) >consensus UCAGUGCGUCCGAUUGUGAGAAUCGCAGCUACUUCUGAUUUUCUGAUUUCUUGUUUUCGACGUUUUCCCAGCCUCCUUAGUGCAAUUCCAUACCCC_____________ .....(((((.((..(..((((...(((..............)))..))))..)..))))))).............................................. (-13.65 = -13.74 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:40 2011