| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,186,900 – 16,186,998 |
| Length | 98 |
| Max. P | 0.525748 |
| Location | 16,186,900 – 16,186,998 |
|---|---|
| Length | 98 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 74.71 |
| Shannon entropy | 0.51278 |
| G+C content | 0.40504 |
| Mean single sequence MFE | -21.62 |
| Consensus MFE | -11.28 |
| Energy contribution | -12.06 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16186900 98 + 27905053 --GAAAAAUUCUAACCGCAA-AUUGCGGAAAUGCCUGUCUGGGCCGUCUGCCU---------------CUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCA --.((((((.....((((..-...))))....((((....)))).((.(((((---------------....((((((......)))))).))))).))))))))........... ( -21.20, z-score = -1.34, R) >droSim1.chr3R_random 84758 98 + 1307089 --GAAAAAUUCUAACCGCAA-AUUGCGGAAAUGCCUGUCUGGGCCGUCUGCCU---------------CUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCA --.((((((.....((((..-...))))....((((....)))).((.(((((---------------....((((((......)))))).))))).))))))))........... ( -21.20, z-score = -1.34, R) >droSec1.super_27 247959 98 - 799419 --GAAAAAUUCUAACCGCAA-AUUGCGGAAAUGCCUGUCUGGGCCGUCUGCCG---------------CUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCA --..............(((.-...(((((...((((....))))..))))).(---------------((..((((((......))))))..))).................))). ( -21.50, z-score = -0.86, R) >droYak2.chr3R 4962743 98 + 28832112 --GAAAAAUUCUAACCGCAA-AUUGCGGAAACGCCUGUCUGGGCCGUCUGCCU---------------CUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCA --.((((((.....((((..-...))))....((((....)))).((.(((((---------------....((((((......)))))).))))).))))))))........... ( -21.50, z-score = -1.40, R) >droEre2.scaffold_4770 12257872 98 - 17746568 --GAAAAAUUCUAACCGCAA-AUUGCGGAAAUGCCUGUCUGGGCCGUCUGCCU---------------CUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCA --.((((((.....((((..-...))))....((((....)))).((.(((((---------------....((((((......)))))).))))).))))))))........... ( -21.20, z-score = -1.34, R) >droAna3.scaffold_12911 2498517 115 - 5364042 AACGAAAAUUCAAACCGCAA-AUUGCGGAAAUGCCUGUCUGGCCCGUCUGCCAGCCAGCCAGCUGCCUCUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCA ..............((((..-...))))...((.(((.(((((......))))).))).))..(((((....((((((......)))))).)))))..(((((......))))).. ( -27.90, z-score = -1.27, R) >dp4.chr2 15351466 106 + 30794189 --UAAAAAUCCCAACCACAA-AUUGUGGAAAUGCCUGUCUGGGCUGCUGUCCUGUC-------UGCCUGUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCA --............((((..-...))))...(((((....((((....))))(((.-------((((((...((((((......)))))))))))).)))..........)).))) ( -23.60, z-score = -1.39, R) >droPer1.super_0 6760059 106 - 11822988 --UAAAAAUCCCAACCACAA-AUUGUGGAAAUGCCUGUCUGGGCUGCUGUCCUGUC-------UGCCUGUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCA --............((((..-...))))...(((((....((((....))))(((.-------((((((...((((((......)))))))))))).)))..........)).))) ( -23.60, z-score = -1.39, R) >droWil1.scaffold_181108 1978553 97 - 4707319 --UUGGUCUCCCUCCCGCCGCACAAAGUCGGUGUCUG--UGGCAAGUCUGCCU---------------CUCUAAUUGUCUGUAUAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCC --..(((.........((((((.............))--))))..((.(((((---------------....((((((......)))))).))))).))..............))) ( -18.32, z-score = -0.40, R) >droVir3.scaffold_13047 8566284 91 - 19223366 -----------CAACAGUUC--CGCCGGGACUAUCUGU-UGAGUUUUCAGUGU----------UGCCUCUUUAAAU-UUUCUACACAUUUCUAAUUAGCAGGCUCCAUCAGCCACG -----------((((((.((--(....)))....))))-))........((((----------.............-.....))))..............((((.....))))... ( -16.17, z-score = -0.69, R) >consensus __GAAAAAUUCUAACCGCAA_AUUGCGGAAAUGCCUGUCUGGGCCGUCUGCCU_______________CUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCA ..............(((((....)))))....((((....))))..............................(((((((.........))))))).(((((......))))).. (-11.28 = -12.06 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:39 2011