| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,160,637 – 16,160,735 |
| Length | 98 |
| Max. P | 0.612685 |
| Location | 16,160,637 – 16,160,735 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 75.98 |
| Shannon entropy | 0.36213 |
| G+C content | 0.35952 |
| Mean single sequence MFE | -18.22 |
| Consensus MFE | -11.60 |
| Energy contribution | -11.85 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16160637 98 + 27905053 ACAACAAUCUGCUACUGAUUA-----CUGAUCACUUAAACAGAUU-AUGUUUCGAAGUGAUACAAAUUCGAAGACCAA-------AGGUCU-----UAAGCCUUGCCUUAUCACAC ..........(((..(((...-----...((((((((((((....-.)))))..)))))))......)))((((((..-------.)))))-----).)))............... ( -18.50, z-score = -1.86, R) >droSim1.chr3R 22198407 92 - 27517382 AUAUCAAUCAGCUACU-AUUA-----CUGAUCACUUAAACAGAUU-AUGUUUCGAAGUGAUACAAAUUCGCAGACCAA-------AGGUCU-----UAAGCCUUAUCACAC----- ..........(((...-....-----.((((((((((((((....-.)))))..))))))).)).......(((((..-------.)))))-----..)))..........----- ( -16.30, z-score = -1.99, R) >droSec1.super_27 221735 97 - 799419 AUAACAAUCUGCUACU-AUUA-----CUGAUCACUUAAACAGAUU-AUGUUUCGAAGUGAUACAAAUUCGCAGUCCAA-------AGGUCU-----UAAGCCUUGCCUUAUCACAC ........((((....-(((.-----...((((((((((((....-.)))))..)))))))...)))..))))....(-------((((..-----...)))))............ ( -16.80, z-score = -1.42, R) >droYak2.chr3R 4939011 116 + 28832112 GUAAUAAUCUGCAAUAAAUUAUGAAACGGAUCACCUAAGCAGAUUUAUGUUGCGGAGUGAUACAAGUUCCAAGACUAAUCAAAAUAGAUUUAGGUCUAAGCCUUGCCCUAACACAC .......(((((((((.....((....((....))....))......)))))))))(((.((((((.....(((((((((......))))..)))))....))))...)).))).. ( -21.30, z-score = -0.88, R) >consensus AUAACAAUCUGCUACU_AUUA_____CUGAUCACUUAAACAGAUU_AUGUUUCGAAGUGAUACAAAUUCGAAGACCAA_______AGGUCU_____UAAGCCUUGCCUUAUCACAC ..........(((................(((((((.((((......))))...)))))))..........(((((..........))))).......)))............... (-11.60 = -11.85 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:34 2011