Locus 1074

Sequence ID	dm3.chr2L
Location	8,105,931 – 8,106,059
Length	128
Max. P	0.500000

overview

Window 4

Location	8,105,931 – 8,106,059
Length	128
Sequences	12
Columns	156
Reading direction	forward
Mean pairwise identity	71.02
Shannon entropy	0.59902
G+C content	0.43007
Mean single sequence MFE	-30.00
Consensus MFE	-14.80
Energy contribution	-14.79
Covariance contribution	-0.01
Combinations/Pair	1.20
Mean z-score	-0.83
Structure conservation index	0.49
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.01
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>dm3.chr2L 8105931 128 + 23011544
CACAUAGUUAGUAGUUAUAAGAGCAAUCAUUUUAAUACGGCACAGCUAAGCACUUUUGCUUAAUUAUGUUG-GCCUGACUGCCUA-------ACUGACUGCCU----GACUGACG--UAACCUGGCAACCGAAACGUGAACG--------------
(((.(((((((((((((...((....))..........(((.((((((((((....)))))).....))))-))))))))).)))-------))))..((((.----.((....)--).....))))........)))....-------------- ( -33.60, z-score =  -2.14, R)
>droSim1.chr2L_random 424738 128 + 909653
CACAUAGUUAGUAGUUAUAAGAGCAAUCAUUUUAAUACGGCACAGCUAAGCACUUUUGCUUAAUUAUGUUG-GCCUGACUGCCUA-------ACUGACUGCCU----GACUGACG--UAAGCUGGCAAACGAAACAUGAACG--------------
....(((((((((((((...((....))..........(((.((((((((((....)))))).....))))-))))))))).)))-------))))..((((.----(.((....--..))).))))...............-------------- ( -32.70, z-score =  -1.67, R)
>droSec1.super_3 3602340 128 + 7220098
CACAUAGUUAGUAGUUAUAAGAGCAAUCAUUUUAAUACGGCACAGCUAAGCACUUUUGCUUAAUUAUGUUG-GCCUGACUGCCUA-------ACUGACUGCCU----GACUGACG--UAACCUGGCAAACGAAACAUGAACG--------------
....(((((((((((((...((....))..........(((.((((((((((....)))))).....))))-))))))))).)))-------))))..((((.----.((....)--).....))))...............-------------- ( -30.80, z-score =  -1.63, R)
>droYak2.chr2L 10736615 128 + 22324452
CACAUAGUUAGUAGUUAUAAGAGCAAUCAUUUUAAUACGGCACAGCUAAGCACUUUUGCUUAAUUAUGUUG-GCCUGACUGCCUA-------ACUGACUGCCU----GACUGACG--UAACCUGGUAACUGAAACAUGAACG--------------
....(((((((((((((..((.(((.(((.........(((.((((((((((....)))))).....))))-)))))).))))).-------..)))))).))----)))))...--.........................-------------- ( -28.80, z-score =  -0.95, R)
>droEre2.scaffold_4929 17011769 128 + 26641161
CACAUUGUUAGUAGUUAUAAGAGCAAUCAUUUUAAUACGGCACAGCUAAGCACUUUUGCUUAAUUAUGUUG-GCCUGACUGCCUA-------ACUGACUGCUU----GACUGACG--UAACCUGGUAACCGAAACGUGAACG--------------
(((...(((((((((((..((.(((.(((.........(((.((((((((((....)))))).....))))-)))))).))))).-------..))))))).)----))).....--.....(((...)))....)))....-------------- ( -28.50, z-score =  -0.65, R)
>droAna3.scaffold_12916 11828873 134 - 16180835
GGCAUAGUUAGUAGUUAUAAGAGCAAUCAUUUUAAUACGGCCCAGCUAAGCACUUUUGCUUAAUUAUGUUG-GCCCGACUGCCUA-------ACUGACUGCUU----GACUGACA--UAACCUGGUAACAAGACUAAGGACUACCUCA--------
((..(((((((((((((...((....)).........(((.(((((((((((....)))))).....))))-).)))........-------..))))))).)----)))))...--...((((((......))).)))....))...-------- ( -33.30, z-score =  -1.16, R)
>dp4.chr4_group4 5626404 120 - 6586962
CACAUAGUUAGUAGUUAUAAGAGCAAUCAUUUUAAUACGGCACAGCUAAGCACUUUUGCUUAAUUAUGUUG-GCCUGACUGACUA-------ACCGACUCUCCUG--GGCUGACUGCCAGCCUGUUAGCC--------------------------
......(((((((((((...((....))..........(((.((((((((((....)))))).....))))-)))))))).))))-------))..........(--(((((.....)))))).......-------------------------- ( -32.80, z-score =  -1.32, R)
>droPer1.super_46 98671 120 + 590583
CACAUAGUUAGUAGUUAUAAGAGCAAUCAUUUUAAUACGGCACAGCUAAGCACUUUUGCUUAAUUAUGUUG-GCCUGACUGACUA-------ACUGACUCUCCUG--GGCUGACUGCCAGCCUGUUAGCC--------------------------
....(((((((((((((...((....))..........(((.((((((((((....)))))).....))))-)))))))).))))-------))))........(--(((((.....)))))).......-------------------------- ( -35.50, z-score =  -1.96, R)
>droWil1.scaffold_180708 6356703 100 + 12563649
CACAUAGUUAGUAGUUAUAAGAGCAAUCAUUUUAAUACGGCACAGCUAAGCACUUUUGCUUAAUUAUGUUG-GCCUGACUGACU----------UGACUGACGUA--ACCUGG-------------------------------------------
......(((((((((((...((....))..........(((.((((((((((....)))))).....))))-)))....)))))----------..))))))...--......------------------------------------------- ( -23.20, z-score =  -1.14, R)
>droGri2.scaffold_15252 13728619 156 + 17193109
CAAGUAGCUGGCAGUUAUAAGAGCAAUCAUUUUAAUACGGCACAGCUAAGCACUUUUGCUUAAUUAUGUUGCGCCCCUCCACCCCCCGGUACACCACCUCUCCCUCCUAUUAACCAACCACUUGACUGACGUAACCUGGAGAGAGCAAAGUCAGUG
(((((.(.(((.........((....))...((((((.(((.((((((((((....)))))).....)))).)))............(((.....))).........))))))))).).)))))((((((.....((......))....)))))). ( -32.60, z-score =  -0.25, R)
>droMoj3.scaffold_6500 21242539 120 + 32352404
----UAGUUGGCAGUUAUAAGAGCAAUCAUUUUAAUACGGCACAGCUAAGCACUUUUGCUUAAUUAUGUUGCCCCCCU--------------------------------UAACCAAGCACUUGACUGACGUAACCUGGAGAGCAUAGCAUAGGCG
----((((((((.((((.((((....)).)).))))...)).)))))).........(((((.(((((((..((...(--------------------------------((....(((....).))....)))...))..)))))))..))))). ( -21.90, z-score =   1.66, R)
>droVir3.scaffold_12963 16303169 140 + 20206255
----UAGUUGGCAGUUAUAAGAGCAAUCAUUUUAAUAUGGCACAGCUAAGCACUUUUGCUUAAUUAUGUUGCCGACCGCAAGCCC-------ACCACGUGCCCCGCCCCCUAACCGAACACUUGACUGACGUAACCUGGAGAGCAGAGCAU-----
----..(((((((((((...((....))..........(((((...((((((....))))))......((((.....))))....-------.....)))))....................)))))).).))))(((.....))).....----- ( -26.30, z-score =   1.22, R)
>consensus
CACAUAGUUAGUAGUUAUAAGAGCAAUCAUUUUAAUACGGCACAGCUAAGCACUUUUGCUUAAUUAUGUUG_GCCUGACUGCCUA_______ACUGACUGCCU____GACUGACG__UAACCUGGCAACCGAAACAUGAACG______________
......(((((..((..(((((.......)))))..))(((.((((((((((....)))))).....)))).)))..................................))))).......................................... (-14.80 = -14.79 +  -0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:04 2011