| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,117,122 – 16,117,218 |
| Length | 96 |
| Max. P | 0.849897 |
| Location | 16,117,122 – 16,117,218 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 75.93 |
| Shannon entropy | 0.46490 |
| G+C content | 0.45887 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -18.51 |
| Energy contribution | -19.45 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.849897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16117122 96 + 27905053 UUAGCUGGGGGACCGCUCUUCCUCAAUCCCCUCAUUCAGAGCUCCCCCAUUAAGGUAUUUCUUCGGAAUGCAGAAGACGCGACGGUCUUUCAUUCA-- ((((.(((((((..(((((..................)))))))))))))))).(((((.(....)))))).((((((......))))))......-- ( -28.07, z-score = -1.24, R) >droSim1.chr3R 22151528 92 - 27517382 UUAGCUGGGGGAACGCUCUUCCCC----UUUCAAAACAGAGCUCCCCCAUUAAGGUAUUUCUUCGGAAUGCAGAAGACACGAAGGUCUUUCAUUCA-- ((((.(((((((..(((((.....----.........)))))))))))))))).(((((.(....)))))).((((((......))))))......-- ( -28.14, z-score = -2.00, R) >droSec1.super_27 177438 92 - 799419 UUAGCUGGGGGAACGCUCUUCCCC----UUUCACAACAGAGCUCCCCCAUUAAGGUAUUUCUUCGGAAUGCAGAAGACACGAAGGUCUUUCAUUCA-- ((((.(((((((..(((((.....----.........)))))))))))))))).(((((.(....)))))).((((((......))))))......-- ( -28.14, z-score = -2.15, R) >droYak2.chr3R 4892521 96 + 28832112 CUAGCUGGGGGAACGAUCUUCCCCAAUCCCCUUUUACAGAGUUCCCCCAUUAAGGUAUCUCUUCGGAAUGCAGAAGACAGGAAGGUCUUUCAUUCA-- .....(((((((((..........................))))))))).....((((.((....)))))).((((((......))))))......-- ( -25.47, z-score = 0.04, R) >droEre2.scaffold_4770 12181963 95 - 17746568 UUAGCGGGGGGAACGUUCUUCCCCAAUACCCUUUUACAGUUUUCCCCCAUUAAGGUAUCUCUUCGGAAUGCAGAAGACAGGA-GGUCUUUCAUUCA-- ...(.((((..(((........................)))..)))))......((((.((....)))))).((((((....-.))))))......-- ( -22.26, z-score = 0.46, R) >droAna3.scaffold_13340 2652250 93 + 23697760 ----CCUUCCAAUCGCUCUUCUACCUUUAAGCCAUA-AAUGGUUCUCCAUAAAAAUAUUCCUUAGGAAUGCCGAAGAAAUAAACUUCUUUCAUUCAAG ----............(((((........(((((..-..)))))...........((((((...))))))..)))))..................... ( -11.50, z-score = -1.11, R) >consensus UUAGCUGGGGGAACGCUCUUCCCCAAU_CCCCAAUACAGAGCUCCCCCAUUAAGGUAUUUCUUCGGAAUGCAGAAGACACGAAGGUCUUUCAUUCA__ ......((((((..(((((..................))))))))))).................(((((..((((((......)))))))))))... (-18.51 = -19.45 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:31 2011