| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,112,465 – 16,112,560 |
| Length | 95 |
| Max. P | 0.593650 |
| Location | 16,112,465 – 16,112,560 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 92.42 |
| Shannon entropy | 0.12473 |
| G+C content | 0.52309 |
| Mean single sequence MFE | -23.17 |
| Consensus MFE | -22.56 |
| Energy contribution | -22.52 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593650 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16112465 95 - 27905053 GUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUUAAACCCAUACACACGUACUAUGCGAUACCACACCACCAAUGCAGGCGCAC--------- ((..(((((((...(((..((..(((((.....))))).))..)))..))).......(((.....)))................))))..))..--------- ( -24.20, z-score = -0.47, R) >droSim1.chr3R 22146829 93 + 27517382 GUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUUAAACCCAUACACACGUACUAUGCGAUAC--CACCACCAAUGCAGACACAC--------- ((..(((((((...(((..((..(((((.....))))).))..)))..))).......(((.....)))....--..........))))..))..--------- ( -22.60, z-score = -1.28, R) >droSec1.super_27 172788 93 + 799419 GUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUUAAACCCAUACACACGUACUAUGCGAUAC--CACCACCAAUGCAGACGCAC--------- ...((((((((...(((..((..(((((.....))))).))..)))..))).(((....)))....)))))..--.........(((....))).--------- ( -23.10, z-score = -1.00, R) >droYak2.chr3R 4887767 97 - 28832112 GUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUGAAACCCAUACACACGUACUAUGCGAUAC--CACCACCAAUGCAGACACA---CACAC-- ((..(((((((........((..(((((.....))))).)).......))).......(((.....)))....--..........))))..)).---.....-- ( -21.46, z-score = -0.50, R) >droEre2.scaffold_4770 12176935 102 + 17746568 GUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUUAAACCCAUACACACGUACUAUGCGAUAC--CACCACCAAUGCAGACACAAUGCACACAC ...((((((((...(((..((..(((((.....))))).))..)))..))).(((....)))....)))))..--.........((((.......))))..... ( -24.50, z-score = -1.19, R) >consensus GUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUUAAACCCAUACACACGUACUAUGCGAUAC__CACCACCAAUGCAGACACAC_________ ((..(((((((...(((..((..(((((.....))))).))..)))..))).......(((.....)))................))))..))........... (-22.56 = -22.52 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:30 2011