| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,108,540 – 16,108,630 |
| Length | 90 |
| Max. P | 0.911937 |
| Location | 16,108,540 – 16,108,630 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 74.63 |
| Shannon entropy | 0.49227 |
| G+C content | 0.52743 |
| Mean single sequence MFE | -30.68 |
| Consensus MFE | -15.97 |
| Energy contribution | -17.92 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911937 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16108540 90 - 27905053 UGCUGCUGGAUGUUGAAUGCUGACGAAGGGGCACUAUCGUGGUCCUUCGCUCGUUCGUAUGUUUUUUCCUCCACGGUAGUAAAGACGACG- (((((((((((((((((((..(.(((((((.(((....))).)))))))).)))))).)))))..........)))))))).........- ( -28.10, z-score = -1.24, R) >droSim1.chr3R 22142873 89 + 27517382 UGCUGCUGGAUGUUGAAUGCUGACGAAGGGGCACCAUCGUGUUCCUUCGCUCGUUCGUUGGG-UUUUUCUCCACAGUAGUAAAGACGACG- ((((((((......(((((..(.(((((((((((....)))))))))))).)))))..((((-......)))))))))))).........- ( -33.90, z-score = -2.85, R) >droSec1.super_27 168924 90 + 799419 UGCUGCUGGAUGUUGAAUGCUGACGAAGGGGCACUAUCGUGUUCCUUUGCUCGUUCGUUGGGUUUUUUCUCCACAGUAGUAAAGACGACG- ((((((((......(((((..(.(((((((((((....)))))))))))).)))))..((((.......)))))))))))).........- ( -31.80, z-score = -2.77, R) >droYak2.chr3R 4883877 89 - 28832112 UGCUGCUGGAUGUUGAAAGCUGACGAUGGGGCACUCUUGUGUUCCUUCGCCUGCUCGUUGGG-UUUUUCUCCAUAGUAGUGGAGACGACG- ....(((.((((.....(((.(.(((.(((((((....))))))).))).).))))))).))-)...(((((((....))))))).....- ( -30.10, z-score = -1.51, R) >droEre2.scaffold_4770 12172823 90 + 17746568 UGCUGCUGGAUGUUGAAAGCUGACGAAGGGGCACUAUCGUGUUCCUUCGCUCGCUCGUUGGGCUUUUUCUCCAGAGUAGUAAAGACGACG- ((((.(((((.(..((((((((((((((((((((....))))))))))).)).(.....)))))))).))))))))))............- ( -33.50, z-score = -2.24, R) >droGri2.scaffold_15074 581301 77 + 7742996 ----------GCAUGAGAGCAGAUUGGGGGUCGCAGUGCAG--CCGCCGUCUG-UCGUGCUG-CGAUGCUGUUGGGUUGUAAAGACGAGUG ----------(((((...((((((.((.(((.((...)).)--)).)))))))-))))))((-((((.(....).)))))).......... ( -26.70, z-score = -0.31, R) >consensus UGCUGCUGGAUGUUGAAAGCUGACGAAGGGGCACUAUCGUGUUCCUUCGCUCGUUCGUUGGG_UUUUUCUCCACAGUAGUAAAGACGACG_ ((((((((.....(((..((.(.(((((((((((....))))))))))).).))))).((((.......)))))))))))).......... (-15.97 = -17.92 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:28 2011