| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,105,447 – 16,105,504 |
| Length | 57 |
| Max. P | 0.998954 |
| Location | 16,105,447 – 16,105,504 |
|---|---|
| Length | 57 |
| Sequences | 7 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 58.81 |
| Shannon entropy | 0.77291 |
| G+C content | 0.42010 |
| Mean single sequence MFE | -13.06 |
| Consensus MFE | -6.59 |
| Energy contribution | -7.77 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.57 |
| SVM RNA-class probability | 0.998954 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16105447 57 - 27905053 ------CAAUUCUUGU-UUUCCACAGUCUCACG-CCUCCGAUUGUGGAAUUGUUUCGUUGACUAC ------((((......-.((((((((((.....-.....)))))))))).......))))..... ( -14.24, z-score = -2.63, R) >droSec1.super_27 165683 57 + 799419 ------CAAUUCUUGU-UUUCCACAAUCUCACG-CCUUCGAUUGUGGAACUGUUUCGUUGACUGC ------((((......-.((((((((((.....-.....)))))))))).......))))..... ( -13.54, z-score = -2.45, R) >droSim1.chr3R 22139618 57 + 27517382 ------CAAUUCUUGU-UUUCCACAGUCUCACG-CCUUCGAUUGUGGAACUGUUUCGUUGACUGC ------((((......-.((((((((((.....-.....)))))))))).......))))..... ( -13.54, z-score = -1.80, R) >droYak2.chr3R 4879753 57 - 28832112 ------CCAUUCUUGU-UUUCUACAGUCUCACG-CCUCCGAUUGUGGAAUUGUUUUGUCGACUGC ------..........-.((((((((((.....-.....))))))))))................ ( -10.30, z-score = -0.91, R) >droEre2.scaffold_4770 12169474 58 + 17746568 ------CAAUUCUUGCAAUUCCACAGUCUCACG-CCUCCGAUUGUGGAAUUGUUUUGUGGACUCG ------....(((.((((((((((((((.....-.....)))))))))))))).....))).... ( -19.60, z-score = -4.05, R) >droVir3.scaffold_13047 16626637 55 + 19223366 CAACUGCAGCUGUAU--CAGCUCCAGUUGAAUAUGAUGAAAGUAUCAACAAAAUGGC-------- ((((((.(((((...--))))).))))))....(((((....)))))..........-------- ( -15.30, z-score = -2.63, R) >droMoj3.scaffold_6540 2602660 56 - 34148556 UUAUUACAAUUGUAUCUCUUCUCUAGUGGAUCA-GUUCAAAUUUUUGAAAUGGUGUU-------- .............................((((-.(((((....))))).))))...-------- ( -4.90, z-score = 0.69, R) >consensus ______CAAUUCUUGU_UUUCCACAGUCUCACG_CCUCCGAUUGUGGAAUUGUUUCGUUGACUGC ..................((((((((((...........))))))))))................ ( -6.59 = -7.77 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:27 2011