Locus 10734

Sequence ID dm3.chr3R
Location 16,091,961 – 16,092,056
Length 95
Max. P 0.966973
window14751

overview

Window 1

Location 16,091,961 – 16,092,056
Length 95
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 84.71
Shannon entropy 0.23594
G+C content 0.55094
Mean single sequence MFE -17.70
Consensus MFE -17.29
Energy contribution -17.85
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -1.61
Structure conservation index 0.98
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.77
SVM RNA-class probability 0.966973
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 16091961 95 + 27905053
GUACGCUCCACACGCGUCAAUGCGGCGGCCACCCACCGCCCACUGCCGCCUUCAGCACACCGAAAUGUAUAACAAAAAAAAAAAAACAACAUCAU
....(((......(((.((.((.(((((.......))))))).)).)))....)))....................................... ( -18.30, z-score =  -1.44, R)
>droSec1.super_27 158664 91 - 799419
GUACGCUCCACACGCGUCAAUGCGGCGGCCUCCCACCGCCCACUGCCGCCUUCAACCCACCGAAAAAUAUAACAAAAAA----AAACAACACCAU
.............(((.((.((.(((((.......))))))).)).)))..............................----............ ( -16.10, z-score =  -1.96, R)
>droYak2.chr3R 4872233 89 + 28832112
GUACGCUCCACACGCGUCAGUGCGGCGGCCUCCCACCGCCCACUGCCGCCUUUAACCCACCGAAAAAUAAAAAAAAA------AAACACCGCCGU
.............(((.(((((.(((((.......)))))))))).)))............................------............ ( -22.10, z-score =  -2.52, R)
>droEre2.scaffold_4770 12161899 85 - 17746568
GUACGCUCCACACGCGUCAGUGCGACGGCCUCCCACCGCCCACUGCUGCCUUCAACCCAUCGAAAAAUAUAAA----------AAACACCGCCGU
....((.......(((.(((((.(.(((.......))).)))))).))).(((........))).........----------.......))... ( -14.30, z-score =  -0.51, R)
>consensus
GUACGCUCCACACGCGUCAAUGCGGCGGCCUCCCACCGCCCACUGCCGCCUUCAACCCACCGAAAAAUAUAAAAAAA______AAACAACACCAU
.............(((.(((((.(((((.......)))))))))).))).............................................. (-17.29 = -17.85 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:27 2011