| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,087,049 – 16,087,100 |
| Length | 51 |
| Max. P | 0.510836 |
| Location | 16,087,049 – 16,087,100 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 97.44 |
| Shannon entropy | 0.03532 |
| G+C content | 0.26458 |
| Mean single sequence MFE | -5.63 |
| Consensus MFE | -5.53 |
| Energy contribution | -5.53 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510836 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16087049 51 - 27905053 CCAC-AAAAAAACCAACUGAUAUAUACGAAUAUGAAUGUAGGUAGUAUAUAU ....-..............((((((((...(((....)))....)))))))) ( -5.90, z-score = -1.04, R) >droSec1.super_27 153785 52 + 799419 CCACAAAAAAAACCAACUGAUAUAUACAAAUAUGAAUGUAGGUAGUAUAUAU ...................(((((((((..(((....)))..).)))))))) ( -5.10, z-score = -0.58, R) >droSim1.chr3R 22127805 52 + 27517382 CCACAAAAAAAACCAACUGAUAUAUACGAAUAUGAAUGUAGGUAGUAUAUAU ...................((((((((...(((....)))....)))))))) ( -5.90, z-score = -1.14, R) >consensus CCACAAAAAAAACCAACUGAUAUAUACGAAUAUGAAUGUAGGUAGUAUAUAU ...................((((((((...(((....)))....)))))))) ( -5.53 = -5.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:26 2011